HAU1040, HAU1040 (genetic_marker) gossypium spp

Marker Overview
NameHAU1040
AliasTA24584_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TA)8
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU1040_F: TCCACTCAAATCAAATCGAA
Primer 2HAU1040_R: TCAAGACATCCCATCAAATG
Product Length293
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A10chromosomeA10:7017019..7017311 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:6604932..6605224 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:122639992..122640288 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:61860692..61860984 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A10chromosomeA10:6262729..6263021 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A10chromosomeGhir_A10:6549124..6549415 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A10chromosomeA10:6572091..6572383 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:6076773..6077065 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:6893019..6893311 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At10chromosomeAt10:6823594..6823884 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7320supercontigscaffold7320:624..914 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A10chromosomeGbar_A10:6692812..6693104 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A10chromosomeA10:6572946..6573238 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017619.1chromosomeCM017619.1:6647303..6647590 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017645.1chromosomeCM017645.1:6995661..6995953 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017697.1chromosomeCM017697.1:6717825..6718115 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A10chromosomeA10:6927091..6927383 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:6304325..6304621 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:6728824..6729120 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_10chromosomeB_10:91093741..91094036 +Gossypium anomalum (B1) genome NSF_v1n/a
F10chromosomeF10:5820360..5820673 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:158802514..158802806 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU1040 ID=HAU1040; Name=HAU1040; organism=Gossypium spp.; type=genetic_marker; length=293bp
TCCACTCAAATCAAATCGAATGTTGCTTTATATATATATATATTTGTATG
AGAATCATATTAGACTACCCAACTTTTTGGGTAAAAAAATGACCTATTTT
TCATATTTAATTCTTAATTATAATCTATTTTTTCTTAAATAAATAAAGTC
CTTCAGTATAAACAGGAAATTTAAAACTTGCCATAGCTCTTGTAGTATGA
TCTAAAAGAATCAGAATTAATGTTGTATCAATTTATGGGTTATCAACCCT
CATAAAAGATAAAAAATAACAACCATTTGATGGGATGTCTTGA