HAU1035, HAU1035 (genetic_marker) gossypium spp

Marker Overview
NameHAU1035
AliasTA24516_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CTT)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1035_F: CAATTTCCTCTTCCCTTGG
Primer 2HAU1035_R: GGGGGAATAGGCTAATAAGG
Product Length106
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:60963488..60963593 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:56621087..56621192 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:55693315..55693419 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:120087474..120087592 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_13chromosomeD10_13:57686877..57686982 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016626.1chromosomeCM016626.1:155411497..155411595 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold4028.1supercontigscaffold4028.1:30784..30889 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:56823531..56823636 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:59916268..59916373 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:60853774..60853879 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:60095091..60095196 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:56743595..56743700 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt13chromosomeDt13:58807646..58807751 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2890supercontigscaffold2890:259253..259358 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:56420716..56420821 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:57544132..57544237 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:57518192..57518297 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:60721989..60722094 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:57238254..57238359 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:61233558..61233663 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:113730433..113730551 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:118427985..118428103 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:55672746..55672851 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:5365225..5365368 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:56819272..56819377 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_13chromosomeChr_13:40822727..40822832 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr13chromosomeChr13:59796336..59796441 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:39737959..39738064 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:30745829..30745934 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:38703430..38703535 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:110393763..110393861 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:92149645..92149762 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU1035 ID=HAU1035; Name=HAU1035; organism=Gossypium spp.; type=genetic_marker; length=106bp
CAATTTCCTCTTCCCTTGGGCTTCTTCTTCTTCTTCCTATTTCCAGAATT
TCAGCCCCTTATTTTCACTATCAATAGCATATGAACCCTTATTAGCCTAT
TCCCCC