HAU1018, HAU1018 (genetic_marker) gossypium spp

Marker Overview
NameHAU1018
AliasTA24189_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CAG)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1018_F: GCTGAGCCTTATGTTGAGGT
Primer 2HAU1018_R: TGGAGCTCTGAAACACAAAA
Product Length157
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:1800136..1800292 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:1824084..1824240 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:122725518..122725674 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
A11chromosomeA11:1699653..1699809 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:1782044..1782200 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:1713007..1713163 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:1658378..1658534 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:1813216..1813372 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1691supercontigscaffold1691:45869..46025 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:1434774..1434930 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:1823133..1823289 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:1837566..1837722 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:1867781..1867937 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:1798802..1798958 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:1822280..1822436 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:1901847..1902003 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:1808112..1808268 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
chr07chromosomechr07:1503157..1503310 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Sequence
>HAU1018 ID=HAU1018; Name=HAU1018; organism=Gossypium spp.; type=genetic_marker; length=157bp
GCTGAGCCTTATGTTGAGGTTCCGGATGATGAAGCTGGACAATCTGAGAG
AAGGAACAGGCATTTGCAGTATATGAATGGTTATAATGGTTCGTATCAAA
ATCAGCAGCAGCAGCAGCAACAGCCTCAAACTAGTAGTTTTGTGTTTCAG
AGCTCCA