HAU1015, HAU1015 (genetic_marker) gossypium spp

Marker Overview
NameHAU1015
AliasTA24130_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AT)9
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU1015_F: GGAAAGCTCGTTTCTAACCA
Primer 2HAU1015_R: CATTCCAAAATTCCAAAACC
Product Length234
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:1844406..1844639 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:2061527..2061758 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018209.1chromosomeCM018209.1:1865592..1865825 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:2030394..2030630 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:2402618..2402858 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:59860390..59860630 +Gossypium turneri (D10) genome NSF_v1_a2n/a
scaffold72.1supercontigscaffold72.1:572800..573033 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:1619170..1619403 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:2223890..2224123 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:1999152..1999385 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:2203550..2203783 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:1799573..1799806 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold23315supercontigscaffold23315:370083..370314 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12202supercontigscaffold12202:29432..29665 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12202supercontigscaffold12202:32669..32905 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:2053634..2053865 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A08chromosomeGbar_A08:2109776..2110009 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:1991219..1991450 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A08chromosomeA08:1995470..1995703 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:2109316..2109547 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017617.1chromosomeCM017617.1:2001691..2001924 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:2199340..2199571 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017643.1chromosomeCM017643.1:2113705..2113945 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:2052027..2052258 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:2054661..2054894 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:2255778..2256011 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:2287891..2288114 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:2392995..2393235 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr08chromosomeChr08:2015227..2015463 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_08chromosomeB_08:2507759..2507995 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:2026116..2026349 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:2067704..2067940 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:1583974..1584210 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:2143909..2144143 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:2086565..2086801 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:1844822..1845058 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:3075360..3075606 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:1821263..1821504 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU1015 ID=HAU1015; Name=HAU1015; organism=Gossypium spp.; type=genetic_marker; length=234bp
GGAAAGCTCGTTTCTAACCAGCTACGATATTATAGATCTGAAAGTTTTGG
GATGAACTAGTTTTACATATATCATGGTTTATTATCACTTTGAAAGTAAT
AGTTAACGAGTCTAATGGTGATTTAAGGTTTTGGTTATTGTATCGATACA
TACATATCTCTGTGTTTTGGTTTTAAGAAAATATTGATATATATAATATA
TATGGATGTGTTTTGGTTTTGGAATTTTGGAATG