HAU1008, HAU1008 (genetic_marker) gossypium spp

Marker Overview
NameHAU1008
AliasTA23883_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TC)13
PCR ConditionAnnealing temperature: 56.7
Primer 1HAU1008_F: TTTTGTCCAAAAATCAGCAC
Primer 2HAU1008_R: GATCGAGCAGCTATGGAGAT
Product Length224
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D08chromosomeD08:64754893..64755116 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018222.1chromosomeCM018222.1:60988426..60988652 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_08chromosomeD5_08:57148314..57148539 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Dt_chr12chromosomeDt_chr12:10353288..10353511 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D08chromosomeD08:61536725..61536948 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D08chromosomeGhir_D08:63940170..63940391 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D08chromosomeD08:64365103..64365326 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D08chromosomeD08:63775722..63775945 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D08chromosomeD08:61073143..61073366 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold9794supercontigscaffold9794:98577..98803 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold9794supercontigscaffold9794:92666..92892 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D08chromosomeGbar_D08:61103431..61103657 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D08chromosomeD08:62938189..62938415 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017630.1chromosomeCM017630.1:62672094..62672318 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017656.1chromosomeCM017656.1:64840571..64840797 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017708.1chromosomeCM017708.1:61414086..61414312 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D08chromosomeD08:64562612..64562835 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
B_08chromosomeB_08:99059344..99059576 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:39307233..39307459 +Gossypium aridum (D4) genome ISU_v1n/a
Sequence
>HAU1008 ID=HAU1008; Name=HAU1008; organism=Gossypium spp.; type=genetic_marker; length=224bp
TTTTGTCCAAAAATCAGCACCTGAACCCCGCGTTTCTCTCTCCCTAACTT
TCTCTACTTTTTTTCGATCAAATCACTGTGAATCTCTCTCTATCTCTTTC
TCTCTCTAGTTTTTTTTTCAGCTTTGATTTTCGGAAGCCAGAAAATTACA
ACAAAAGGAATGCTTTTTATACATGCAGACAGAAAATGAACAGACACCCA
ATGAATCTCCATAGCTGCTCGATC