HAU1006, HAU1006 (genetic_marker) gossypium spp

Marker Overview
NameHAU1006
AliasTA23867_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GCCTCG)4
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU1006_F: CCCAACTAACGCTTCATTTT
Primer 2HAU1006_R: CGTTTGAGGTGTTGTTTGAG
Product Length203
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:63028978..63029178 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:60162801..60163001 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:8573262..8573474 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:46898801..46898986 +Gossypioides kirkii genome ISU_v3n/a
D10_11chromosomeD10_11:58413771..58413971 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:129966952..129967140 +Gossypium australe (G2) genome CRI_v1.1n/a
scaffold165.1supercontigscaffold165.1:387757..387957 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:58253708..58253908 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:62867497..62867697 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:62097691..62097891 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:62786853..62787053 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:60098427..60098627 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold25092supercontigscaffold25092:22929..23129 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:59607686..59607886 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:62618046..62618246 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:62097200..62097400 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:63629426..63629626 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:59702181..59702381 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:62670446..62670646 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:6880754..6880966 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:89644720..89644908 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:59717440..59717634 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:40796978..40797178 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:60721005..60721199 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:36782266..36782463 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:32140147..32140347 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:39238444..39238644 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:101515537..101515749 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:88694793..88694987 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:13792524..13792719 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU1006 ID=HAU1006; Name=HAU1006; organism=Gossypium spp.; type=genetic_marker; length=203bp
CCCAACTAACGCTTCATTTTCCTTTCTACCTACCTCTTTCTTTCTATCAA
TAAAAAGCCTCGGCCTCGGCCTCGGCCTCGGCGTTGTTGTTGTGGTTGTG
GTTGTAGATCTTCTTCAATCTAAGCTTCTCAGAGACTTAAAATGGCTCGC
AAGAAGATCAGAGAATACGATTCCAAGAGACTTCTCAAACAACACCTCAA
ACG