HAU0993, HAU0993 (genetic_marker) gossypium spp

Marker Overview
NameHAU0993
AliasTA23575_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TTGT)5
PCR ConditionAnnealing temperature: 56.5
Primer 1HAU0993_F: AGGAGCAGAAGCTAGGAAGA
Primer 2HAU0993_R: GCTTGGAAACGGAATCTTTA
Product Length260
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:46834426..46834681 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:71161263..71161522 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018218.1chromosomeCM018218.1:44956178..44956435 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018205.1chromosomeCM018205.1:69933861..69934121 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:9084326..9084584 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:5567311..5567564 +Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:11734382..11734642 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_04chromosomeD10_04:43864421..43864692 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016617.1chromosomeCM016617.1:112416872..112417130 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:28635223..28635478 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D04chromosomeD04:41783933..41784188 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A04chromosomeA04:52443569..52443828 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:46704959..46705215 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A04chromosomeGhir_A04:73466186..73466445 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:47675910..47676165 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:76454462..76454721 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:46597746..46598001 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:73590145..73590404 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:44586396..44586651 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:69222203..69222462 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At04chromosomeAt04:53474072..53474332 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At04chromosomeAt04:53470331..53470588 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4401supercontigscaffold4401:159502..159759 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4401supercontigscaffold4401:168484..168741 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4165supercontigscaffold4165:377757..378017 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4165supercontigscaffold4165:374016..374273 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:43066826..43067083 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:70274350..70274610 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:48178317..48178573 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:70890871..70891131 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:45291870..45292125 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:72370110..72370368 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:48150030..48150284 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:80416169..80416429 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:45243544..45243800 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:70642109..70642370 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:48392529..48392784 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:77203282..77203541 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:96901766..96902028 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:98740361..98740622 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:9035387..9035647 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:11563084..11563345 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:44904480..44904745 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_12chromosomeChr_12:17728433..17728791 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr12chromosomeChr12:44543311..44543581 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:15985202..15985451 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr12chromosomeChr12:19493714..19494072 -Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:91781051..91781312 -Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:81008237..81008495 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:152414422..152414682 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0993 ID=HAU0993; Name=HAU0993; organism=Gossypium spp.; type=genetic_marker; length=260bp
AGGAGCAGAAGCTAGGAAGATAGGGCTTGTTTGTTTAGTTTGTTTGATTT
TTTTTTAACTATAATGTGAAGCCCTAGCTAAGCATTTTTAGTTAGGGTTT
TCTTTTGGATTTTGGTTCCACGAGATCCGGACGAAGGATAAAGGCTGCGT
TTTTGGCAGAATGGGGAATTGTTGTAGATCTCCAGCGGCGGTTGCTAGGG
AAGACGTTAAATCGAACTTCTCCGGTCACGATCATGGCCGTAAAGATTCC
GTTTCCAAGC