HAU0986, HAU0986 (genetic_marker) gossypium spp

Marker Overview
NameHAU0986
AliasTA23378_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AAT)5
PCR ConditionAnnealing temperature: 57.3
Primer 1HAU0986_F: TATGTGGCATGTGTGGACTT
Primer 2HAU0986_R: ACAAGCAACACACCATTCAG
Product Length130
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:62448445..62448572 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:59678349..59678476 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:9062714..9062841 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
scaffold165.1supercontigscaffold165.1:867543..867670 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:57598572..57598699 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:62325381..62325508 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:61563248..61563375 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:62302309..62302436 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:59555700..59555827 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold23088supercontigscaffold23088:132996..133123 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:59125165..59125292 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:62142969..62143096 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:61579756..61579883 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:63087857..63087984 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:59227545..59227672 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:62126746..62126873 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:7369564..7369691 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr11chromosomeChr11:14823752..14824102 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0986 ID=HAU0986; Name=HAU0986; organism=Gossypium spp.; type=genetic_marker; length=130bp
TATGTGGCATGTGTGGACTTTTTAGTTATTAGGCCTGATCAGGTTTCCAC
TTCATCCTTTTCATTTCAGGTCACGACAATATTAAAAATAATAAATAATA
AATTTATTCCCTGAATGGTGTGTTGCTTGT