HAU0981, HAU0981 (genetic_marker) gossypium spp

Marker Overview
NameHAU0981
AliasTA23282_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TC)8
PCR ConditionAnnealing temperature: 56.4
Primer 1HAU0981_F: CTGCTTTCTTTCAAAGCTGA
Primer 2HAU0981_R: ATCTGGCCGACTTAAACAAC
Product Length218
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D12chromosomeD12:54294641..54295592 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A12chromosomeA12:92668154..92669091 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018226.1chromosomeCM018226.1:51049883..51050834 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_12chromosomeD5_12:8762426..8763377 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_12chromosomeKI_12:6816660..6817495 +Gossypioides kirkii genome ISU_v3n/a
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:10479689..10480636 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_12chromosomeD10_12:46048797..46049752 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016625.1chromosomeCM016625.1:13623061..13624018 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr3chromosomeAt_chr3:19491801..19492738 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr8chromosomeDt_chr8:47226438..47227389 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D12chromosomeD12:50654172..50655123 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A12chromosomeA12:78185409..78186346 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D12chromosomeGhir_D12:53509373..53510325 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A12chromosomeGhir_A12:97429354..97430290 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D12chromosomeD12:52349028..52349979 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A12chromosomeA12:97824893..97825830 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D12chromosomeD12:53140460..53141411 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A12chromosomeA12:95539849..95540786 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D12chromosomeD12:51361420..51362371 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A12chromosomeA12:92468878..92469815 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt12chromosomeDt12:53988782..53989733 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold27504supercontigscaffold27504:115174..116125 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D12chromosomeGbar_D12:50381535..50382486 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D12chromosomeD12:51504171..51505122 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017634.1chromosomeCM017634.1:51457241..51458193 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017621.1chromosomeCM017621.1:92840172..92841117 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017660.1chromosomeCM017660.1:54295734..54296683 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017647.1chromosomeCM017647.1:96377118..96378064 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017712.1chromosomeCM017712.1:52130899..52131850 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D12chromosomeD12:53580142..53581093 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A12chromosomeA12:99065439..99066376 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr12chromosomeChr12:99765464..99766412 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr12chromosomeChr12:106863889..106864836 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr12chromosomeChr12:49021563..49022515 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_12chromosomeB_12:78287468..78288451 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr08chromosomeChr08:49345170..49346123 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_08chromosomeChr_08:36023485..36024539 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr08chromosomeChr08:50782204..50783164 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr08chromosomeChr08:34953890..34954842 -Gossypium aridum (D4) genome ISU_v1n/a
Chr08chromosomeChr08:27517131..27518084 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr08chromosomeChr08:33823761..33824712 -Gossypium lobatum (D7) genome ISU_v1n/a
E12chromosomeE12:103159118..103160083 -Gossypium stocksii (E1) genome NSF_v1n/a
F12chromosomeF12:82181239..82182192 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU0981 ID=HAU0981; Name=HAU0981; organism=Gossypium spp.; type=genetic_marker; length=218bp
CTGCTTTCTTTCAAAGCTGACAGATTTTCTCTCTTTCTCTCTCAAGCTCA
AATCACCTCACGATTCAGATGGCCATGCAGGAAGGAAATCCTGCGGGTAC
TCCCAGTGCTCAAGTTGTTGGAAATGCTTTTGTGGAGCAGTATTACCATA
TTCTTCACCAATCACCGAACCTCGTGCATAGATTTTATCAAGATTCGAGT
TGTTTAAGTCGGCCAGAT