HAU0977, HAU0977 (genetic_marker) gossypium spp

Marker Overview
NameHAU0977
AliasTA23085_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GGT)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0977_F: TGGTGCTCAAAATGAAGAAA
Primer 2HAU0977_R: CCTTTAACTGTTCCCCATTG
Product Length236
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D04chromosomeD04:51721797..51722032 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A04chromosomeA04:77865840..77866075 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018205.1chromosomeCM018205.1:76435745..76435980 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018218.1chromosomeCM018218.1:49654372..49654607 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_04chromosomeD5_04:4363596..4363822 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_2_4chromosomeKI_2_4:3454304..3454527 -Gossypioides kirkii genome ISU_v3n/a
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:4566472..4566707 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016617.1chromosomeCM016617.1:121788769..121789001 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr12chromosomeDt_chr12:6048555..6048790 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold1013_A04supercontigscaffold1013_A04:12781..13016 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold3980_D04supercontigscaffold3980_D04:25692..25927 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D04chromosomeGhir_D04:51478892..51479127 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Scaffold2518supercontigScaffold2518:76673..76908 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D04chromosomeD04:52365079..52365314 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A04chromosomeA04:82888819..82889054 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D04chromosomeD04:51375711..51375946 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A04chromosomeA04:80268079..80268314 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D04chromosomeD04:49353162..49353397 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A04chromosomeA04:75895491..75895726 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold28659supercontigscaffold28659:5268..5503 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold20322supercontigscaffold20322:3666..3901 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D04chromosomeGbar_D04:47669681..47669916 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A04chromosomeGbar_A04:76910430..76910665 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D04chromosomeD04:52804185..52804420 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A04chromosomeA04:77364410..77364645 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017626.1chromosomeCM017626.1:49835006..49835241 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017613.1chromosomeCM017613.1:78719344..78719579 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017652.1chromosomeCM017652.1:52723791..52724026 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017639.1chromosomeCM017639.1:87252917..87253152 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017704.1chromosomeCM017704.1:49999429..49999664 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017691.1chromosomeCM017691.1:77177136..77177371 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D04chromosomeD04:53263181..53263416 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A04chromosomeA04:83900067..83900302 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr04chromosomeChr04:103931493..103931728 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr04chromosomeChr04:105694397..105694632 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr04chromosomeChr04:4319660..4319886 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_02chromosomeB_02:5320748..5320971 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr12chromosomeChr12:49745983..49746218 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr12chromosomechr12:25974163..25974398 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr12chromosomeChr12:49586404..49586639 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr12chromosomeChr12:24498789..24499024 +Gossypium aridum (D4) genome ISU_v1n/a
Chr12chromosomeChr12:23155612..23155847 +Gossypium lobatum (D7) genome ISU_v1n/a
E04chromosomeE04:99958485..99958720 +Gossypium stocksii (E1) genome NSF_v1n/a
F04chromosomeF04:86674088..86674317 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr04chromosomeChr04:170891414..170891646 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0977 ID=HAU0977; Name=HAU0977; organism=Gossypium spp.; type=genetic_marker; length=236bp
TGGTGCTCAAAATGAAGAAAAAATGAAGCCTGAAGAGAGTGTTGGTGTTG
AAGACAAATCTTTAGCTGAAATTGATACCAAGATGGGTGTTATTGACCAT
GACGATGAGGGTGGTGACGGTGGTGGTGGTGGTGGCCCCATTCATTCACA
TGATAATGGTCTTTATGGAAGCCCCAACTCTGACATGAAACCCCAAGATG
ATGACCATGGCATTGACAATGGGGAACAGTTAAAGG