HAU0974, HAU0974 (genetic_marker) gossypium spp

Marker Overview
NameHAU0974
AliasTA22981_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CTT)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0974_F: AATCCTCGATCTCGCTTTC
Primer 2HAU0974_R: CACAGTAATGGTCACGGTGT
Product Length249
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:59964514..59965164 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:54740040..54740694 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:52923078..52923726 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:8146109..8146767 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr10chromosomeDt_chr10:45459790..45460440 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:56308472..56309122 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:58418306..58418951 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:57484944..57485594 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:57627642..57628292 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:54901252..54901902 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold20474supercontigscaffold20474:13462..14116 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:54920453..54921107 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:55096710..55097364 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:55420591..55421238 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:58418155..58418803 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:55444565..55445215 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:58392120..58392770 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:52677733..52678383 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:54907615..54908267 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:38173496..38174228 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:56676451..56677100 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Sequence
>HAU0974 ID=HAU0974; Name=HAU0974; organism=Gossypium spp.; type=genetic_marker; length=249bp
AATCCTCGATCTCGCTTTCAAATATTGGTTCTTCATTTCATCGCCCTTCC
TTTGCTTCTTCTATCTTCTTTGTTCAGATCTGAGGTCTCTCAGTTCTAAG
CCATGGCCGATAAGGTGACTATAATGGTGCTGAAGGTGGACCTTCAGTGC
TGGCGGTGCTACAAGAAAGTGAAGAAAGTGCTGTGTAAATTCCCTCAAAT
ACGAGACCAGATATACGATGAGAAAGCCAACACCGTGACCATTACTGTG