HAU0963, HAU0963 (genetic_marker) gossypium spp

Marker Overview
NameHAU0963
AliasTA22726_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TCC)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0963_F: TTCTTAGCCCACCAATCTTC
Primer 2HAU0963_R: AGGGGTTGATGAAAAGATCA
Product Length238
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D01chromosomeD01:10344483..10344718 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A01chromosomeA01:13010951..13011188 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018215.1chromosomeCM018215.1:10346695..10346930 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018202.1chromosomeCM018202.1:12061997..12062234 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:9945074..9945309 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:13556577..13556817 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:50588893..50589131 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr2chromosomeAt_chr2:12487698..12487935 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
Dt_chr2chromosomeDt_chr2:45347742..45347977 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:9487682..9487917 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:11846321..11846558 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D01chromosomeGhir_D01:10807944..10808179 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A01chromosomeGhir_A01:12592661..12592898 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D01chromosomeD01:10606240..10606475 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:12167751..12167988 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D01chromosomeD01:10337315..10337550 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:12489649..12489886 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D01chromosomeD01:10696952..10697187 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A01chromosomeA01:12347505..12347742 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6250supercontigscaffold6250:400552..400787 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold1521supercontigscaffold1521:96144..96381 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D01chromosomeGbar_D01:10954370..10954605 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A01chromosomeGbar_A01:12207637..12207874 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D01chromosomeD01:10801191..10801426 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A01chromosomeA01:12224427..12224664 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017623.1chromosomeCM017623.1:10550841..10551076 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017610.1chromosomeCM017610.1:13213534..13213771 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017649.1chromosomeCM017649.1:11444707..11444942 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017636.1chromosomeCM017636.1:12511640..12511874 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017701.1chromosomeCM017701.1:10743902..10744137 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017688.1chromosomeCM017688.1:12324416..12324653 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D01chromosomeD01:11008201..11008436 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A01chromosomeA01:12498516..12498753 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:12135267..12135504 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:13446633..13446873 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:9804800..9805035 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:13592036..13592274 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:10419281..10419516 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_02chromosomeChr_02:8589934..8590172 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:10661080..10661315 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02chromosomeChr02:10726127..10726374 +Gossypium aridum (D4) genome ISU_v1n/a
Chr02chromosomeChr02:7419403..7419650 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:9732862..9733096 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:15079994..15080250 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr01chromosomeChr01:177664597..177664843 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0963 ID=HAU0963; Name=HAU0963; organism=Gossypium spp.; type=genetic_marker; length=238bp
TTCTTAGCCCACCAATCTTCTTCTTCCTCCTCCTCCTCCCTTGTTTCCCT
TTCCCTTCCTTCTTTCTTTCCTTCTTTCCTTCCTCTTTCCTTTGTCTTCT
TGCTTTATCTTCCCTTTATCTTCAATCTTTTGTATTCTGTTTTTTTCTTA
GATTCATAGATAAGTTCGTTTTGGTTGGGTTGATTATTTCCTCACTTCCC
TTCTTTTTTGTTTCATCGTGATCTTTTCATCAACCCCT