HAU0962, HAU0962 (genetic_marker) gossypium spp

Marker Overview
NameHAU0962
AliasTA22709_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AG)8
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0962_F: AAGCTGTCACCCAAACTTTC
Primer 2HAU0962_R: GGATGATGACCTTCAAGAGG
Product Length284
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:2190301..2190583 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D02chromosomeD02:68894332..68894615 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A03chromosomeA03:12127120..12127402 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D5_03chromosomeD5_03:1798206..1798489 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:40466771..40467092 +Gossypioides kirkii genome ISU_v3n/a
D10_03chromosomeD10_03:1714561..1714844 +Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr5chromosomeDt_chr5:9025698..9025981 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:65488230..65488513 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:67957314..67957597 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:67981855..67982138 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:69290899..69291182 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:66388365..66388648 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold21492supercontigscaffold21492:17980..18262 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:65811912..65812194 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:67012565..67012847 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:68063659..68063942 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:69703283..69703566 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:66617735..66618017 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:70374395..70374678 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:61279235..61279518 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:2026452..2026773 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:64305455..64305739 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:48856642..48856923 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:42070765..42071049 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:65778542..65778854 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:36226234..36226542 -Gossypium gossypioides (D6) genome ISU_v1n/a
F03chromosomeF03:108447640..108447964 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch14_Dt.02N/A127HAU0962View
Sequence
>HAU0962 ID=HAU0962; Name=HAU0962; organism=Gossypium spp.; type=genetic_marker; length=284bp
AAGCTGTCACCCAAACTTTCCCTCAATTCCTTCACAAATTACAGGTCATT
CCAGCTTTTGCATAAGAGAGAGAGAGAGAAAAAAAAAGCTAGAAAATACT
TTGAAAAACACGCTAGAAAGTTTCAGCCAGTTTTCCTGCCAGACAAACAA
GTCCACCAGTCCTCTCACTAGGTTTCAATATAGAAAATTTTTTCTCCTTT
TTCTATCGATCTGTACATCCGCTGATTCCTTAGTGCTCTTTACGATGCCT
TCTCGCCGTAGAACCCTCTTGAAGGTCATCATCC