HAU0958, HAU0958 (genetic_marker) gossypium spp

Marker Overview
NameHAU0958
AliasTA22492_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CT)16
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0958_F: TGAAATCCCAGAGCTTTTTC
Primer 2HAU0958_R: TGAAAAATCCCCCTTCATAA
Product Length227
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D03chromosomeD03:45605139..45605848 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:45930937..45931647 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:7210058..7210788 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:39753803..39754524 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:106202554..106203271 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:44108496..44109213 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:102397032..102397749 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr3chromosomeDt_chr3:20850525..20851235 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D03chromosomeD03:39688341..39689051 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D03chromosomeGhir_D03:45426991..45427698 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D03chromosomeD03:46908789..46909499 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D03chromosomeD03:46424230..46424940 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D03chromosomeD03:45732125..45732834 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1351supercontigscaffold1351:78561..79291 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold11698supercontigscaffold11698:11628..12339 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:44339814..44340524 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:7084107..7084837 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
CM017625.1chromosomeCM017625.1:45193456..45194174 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:7627884..7628600 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:49291328..49292042 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:8041088..8041809 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:46804541..46805254 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:7532401..7533136 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D03chromosomeD03:47685685..47686394 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:7119849..7120577 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:111001386..111002104 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:41848821..41849542 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:7909057..7909762 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:43221260..43221970 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr03chromosomeChr03:24904218..24904993 +Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:26851478..26852255 +Gossypium lobatum (D7) genome ISU_v1n/a
E02chromosomeE02:78694787..78695488 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr02chromosomeChr02:13248100..13248812 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0958 ID=HAU0958; Name=HAU0958; organism=Gossypium spp.; type=genetic_marker; length=227bp
TGAAATCCCAGAGCTTTTTCTCAGCTCTCTCGCTCTCTCTCTCTCTCTCT
CTCTCATCTTTTACATGGCATCTCAAGCCAGCCTCCTCCTTCAAAAACAG
CTCAAAGATCTTTGTAAGAATCCGGTTGATGGGTTCTCGGCTGGATTGGT
CGATGAGAACAATATCTTTGAATGGAGTGTAACAATTATTGGACCTCCTG
ATACTCTTTATGAAGGGGGATTTTTCA