HAU0930, HAU0930 (genetic_marker) gossypium spp

Marker Overview
NameHAU0930
AliasTA21649_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AGA)6
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0930_F: TGGGGAAGAAAGAAGATGAG
Primer 2HAU0930_R: CGTCTTTGAGTGGTGAACTG
Product Length287
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:21366350..21366732 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:19585430..19585812 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_01chromosomeD5_01:15224999..15225380 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:21709223..21709605 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_01chromosomeD10_01:45065883..45066264 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016614.1chromosomeCM016614.1:28874970..28875351 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:29122952..29123334 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A01chromosomeA01:20113727..20114109 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold1210supercontigScaffold1210:663945..664327 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:19976956..19977338 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:20480129..20480511 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:18813900..18814282 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:21403705..21404087 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5949supercontigscaffold5949:14132..14514 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:19732738..19733120 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:19552668..19553050 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:21073059..21073432 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:20192711..20193093 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:19764693..19765075 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:20619381..20619763 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:20741494..20741876 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:21978637..21979019 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr01chromosomeChr01:15121454..15121835 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_01chromosomeB_01:21881223..21881609 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr02chromosomeChr02:16094057..16094438 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_02chromosomeChr_02:12178880..12179261 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr02chromosomeChr02:15882820..15883201 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr02_3472900chromosomeChr02_3472900:1990..2368 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr02chromosomeChr02:13543220..13543600 +Gossypium lobatum (D7) genome ISU_v1n/a
E01chromosomeE01:23807057..23807437 +Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:17888461..17888842 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr01chromosomeChr01:161856384..161856768 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0930 ID=HAU0930; Name=HAU0930; organism=Gossypium spp.; type=genetic_marker; length=287bp
TGGGGAAGAAAGAAGATGAGAAGCCTCAACCTCAAGAGGAGGTGGTCGCC
ACCCAGTTTGAGAAAGTCAAGATAGAAGAGGAACATAAGGAAGATGAGAA
GAAACACAGTCTCCTGGACAAGCTTCACCTATCCAATAGCAGCTCCAGCT
CTTCTAGTGACGAGGAAGAAGGTGAAGGCGGAGAGAAGAAGAAGAAGAAG
AAAAAGGAGAAGGGAAAGAAAGAACAGGACAGTGCAGTCCCAGTGGAGAA
GTGCGATGAGGCAGCAACAGTTCACCACTCAAAGACG