HAU0928, HAU0928 (genetic_marker) gossypium spp

Marker Overview
NameHAU0928
AliasTA21614_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TC)12
PCR ConditionAnnealing temperature: 56.8
Primer 1HAU0928_F: CAATCTTTCCCACTTTCCAT
Primer 2HAU0928_R: AATCGCTCGAACTGAATCTC
Product Length211
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:17864903..17865113 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018217.1chromosomeCM018217.1:36983245..36983443 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:17469204..17469853 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_02chromosomeD5_02:30959873..30960070 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr01_CRI-A2_v1.0.a1chromosomeChr01_CRI-A2_v1.0.a1:94028823..94029033 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_02chromosomeD10_02:35525018..35525241 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016615.1chromosomeCM016615.1:83878854..83879060 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:8775136..8775346 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:16474332..16474542 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:18711139..18711349 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:17919065..17919275 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:18529536..18529746 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:17797453..17797663 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:17785800..17786454 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7166supercontigscaffold7166:115471..116121 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D03chromosomeGbar_D03:35397306..35397504 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:17475488..17476142 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D03chromosomeD03:37979889..37980087 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:17442532..17443186 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017625.1chromosomeCM017625.1:36421442..36421640 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:17891330..17891540 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017651.1chromosomeCM017651.1:40280645..40280843 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:18336479..18336689 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017703.1chromosomeCM017703.1:37990389..37990587 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:18869406..18869616 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr02chromosomeChr02:22383619..22383829 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr01chromosomeChr01:99948202..99948412 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr02chromosomeChr02:33044631..33044829 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_04chromosomeB_04:19183210..19183425 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr03chromosomeChr03:34497570..34497760 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr03chromosomechr03:21941160..21941370 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_03chromosomeChr_03:18762259..18762481 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr03chromosomeChr03:36419743..36419955 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr03chromosomeChr03:19133089..19133289 -Gossypium aridum (D4) genome ISU_v1n/a
Chr03chromosomeChr03:16317699..16317901 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr03chromosomeChr03:20333563..20333864 -Gossypium lobatum (D7) genome ISU_v1n/a
F02chromosomeF02:58822680..58822889 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU0928 ID=HAU0928; Name=HAU0928; organism=Gossypium spp.; type=genetic_marker; length=211bp
CAATCTTTCCCACTTTCCATCCCTCTTCGTCTCCTTCAATTCAATTCTTT
AGTTTAAAATTCTCACTCATCTCTCTCTGTCTCTCTCTCTCTCCACTTTA
AAATCTCAAAAAATCCAAAAACAAACGAAGATATAGGAGTATCCCGGTTT
CACTGCAAACGCCATTGATGAGAGCTTAGTTTGTAGAGAAAGAGATTCAG
TTCGAGCGATT