HAU0919, HAU0919 (genetic_marker) gossypium spp

Marker Overview
NameHAU0919
AliasTA21377_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAA)7
PCR ConditionAnnealing temperature: 56.4
Primer 1HAU0919_F: ATATGATTAAACCCCGCAAA
Primer 2HAU0919_R: TGGAGAGCTGAGACTGTAGC
Product Length249
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A01chromosomeA01:91835326..91835570 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018202.1chromosomeCM018202.1:101070236..101070480 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:86629404..86629651 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016614.1chromosomeCM016614.1:121014775..121015012 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr2chromosomeAt_chr2:59883768..59884012 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D01chromosomeD01:51903856..51904100 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A01chromosomeA01:87962825..87963047 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A01chromosomeGhir_A01:105472739..105472983 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A01chromosomeA01:106181136..106181380 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A01chromosomeA01:103698473..103698716 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A01chromosomeA01:100579466..100579710 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At01chromosomeAt01:70847648..70847892 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2641supercontigscaffold2641:147425..147669 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A01chromosomeGbar_A01:103571606..103571849 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A01chromosomeA01:103651079..103651323 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017610.1chromosomeCM017610.1:102167877..102168123 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017636.1chromosomeCM017636.1:109533669..109533906 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017688.1chromosomeCM017688.1:99835953..99836201 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A01chromosomeA01:107151974..107152217 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr01chromosomeChr01:110366864..110367113 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr02chromosomeChr02:12766021..12766268 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
E01chromosomeE01:103107108..103107353 -Gossypium stocksii (E1) genome NSF_v1n/a
F01chromosomeF01:88122094..88122326 -Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU0919 ID=HAU0919; Name=HAU0919; organism=Gossypium spp.; type=genetic_marker; length=249bp
ATATGATTAAACCCCGCAAAAAAAAAAAAAAAAAGAAGAAGAAGAAGAAG
AAGAAGGAGATACCAAGATATTTTGTGGTAGCAGTGAATTGATTTTGTGT
GTTGGTAAATTTGTATTAGTTTAAGGATTTGTTGTAAAATTTGCTATCTT
GGGTTTTATCTATATTTCTATTTGTGTATTTTGGACTGTATCATAATGTT
ATAACGTTTGGAAGTAAAAGTACCTTGTAGCTACAGTCTCAGCTCTCCA