HAU0876, HAU0876 (genetic_marker) gossypium spp

Marker Overview
NameHAU0876
AliasTA20255_3635
HAU0876=NTU0009
NTU0009
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CAC)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0876_F: ACAAACGCTGTCACTACGAA
Primer 2HAU0876_R: CCATCCTTGTTTTCCAACTC
Product Length184
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:105525328..105525511 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:103063335..103063518 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:132583228..132583426 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:3641024..3641222 -Gossypium australe (G2) genome CRI_v1.1n/a
At_chr5chromosomeAt_chr5:51598488..51598686 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:97277874..97278057 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A03chromosomeGhir_A03:109924428..109924611 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:108612725..108612908 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:107031454..107031637 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:102279995..102280178 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold41964supercontigscaffold41964:6913..7096 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A03chromosomeGbar_A03:102237375..102237558 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:104569001..104569184 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:103947134..103947317 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:111048157..111048340 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:105052164..105052347 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:110593499..110593682 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:3093594..3093792 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:3123477..3123675 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_03chromosomeB_03:3145926..3146115 -Gossypium anomalum (B1) genome NSF_v1n/a
E03chromosomeE03:122604042..122604234 +Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:107586836..107587019 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:3580446..3580653 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0876 ID=HAU0876; Name=HAU0876; organism=Gossypium spp.; type=genetic_marker; length=184bp
ACAAACGCTGTCACTACGAAGGCGGAAACACCACCACCACCACCAACAAC
AACAACAAGAGCAGTAGCGTCAGCTTGAGTGGGGTGACGGTGTCGGACGG
TGGCGCGTTGAGCCAAACCCGTTGCGTCGACTTTGACTTTGACCTAAACT
TGCCCGCTTTGTGCGAGTTGGAAAACAAGGATGG