HAU0873, HAU0873 (genetic_marker) gossypium spp

Marker Overview
NameHAU0873
AliasTA20220_3635
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AAG)7
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0873_F: ATGAAAACCTGTTGGACGAT
Primer 2HAU0873_R: GGATTTCAGCCTCTCTTTCA
Product Length246
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:3170761..3171184 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A10chromosomeA10:3192405..3192827 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018211.1chromosomeCM018211.1:3084621..3085043 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:59568111..59568534 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:126207870..126208292 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:61160237..61160660 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:4078970..4079393 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr5chromosomeDt_chr5:20632632..20633055 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold26.1supercontigscaffold26.1:183304..183726 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:2881924..2882347 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A10chromosomeA10:3012737..3013159 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:3383260..3383683 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A10chromosomeGhir_A10:2867217..2867639 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:3061313..3061736 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A10chromosomeA10:3080746..3081168 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:3171886..3172309 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A10chromosomeA10:2458894..2459316 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:3228889..3229312 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A10chromosomeA10:3294676..3295098 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt10chromosomeDt10:3200381..3200803 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold3390supercontigscaffold3390:106795..107217 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold22349supercontigscaffold22349:49257..49679 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:3033669..3034092 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A10chromosomeGbar_A10:3221507..3221929 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:3080764..3081187 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A10chromosomeA10:3162199..3162621 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:3056406..3056829 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017619.1chromosomeCM017619.1:3283542..3283964 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:3133605..3134028 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017645.1chromosomeCM017645.1:3348341..3348763 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:3087330..3087753 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017697.1chromosomeCM017697.1:3208085..3208507 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:3173465..3173888 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A10chromosomeA10:3279483..3279905 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:3111858..3112280 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:3129323..3129745 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:2819014..2819437 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:98443360..98443783 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:2814515..2814938 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:2902386..2902809 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:2402184..2402607 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:3053088..3053511 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:2396576..2396999 +Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:2242910..2243333 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:2997702..2998125 +Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:110273821..110274243 -Gossypium stocksii (E1) genome NSF_v1n/a
F10chromosomeF10:2947253..2947676 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr10chromosomeChr10:166059077..166059500 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0873 ID=HAU0873; Name=HAU0873; organism=Gossypium spp.; type=genetic_marker; length=246bp
ATGAAAACCTGTTGGACGATGTCGAGAAGGCCACCGGCGATCAATCGACA
ATGGCTGCACATTTGAACAAGTCTCAGGATGTTGGAATTCATGCAAGACA
TATCAGCAGTGTGTCTACATTGGATAGTGAAATGGCTGAAGACAATGGGA
ATTCGATTTGGAAGAACAGGGTGGAAAGTTGGAAAGAAAAGAAGAACAAG
AAGAAGAAGCCTGCAACAACTAAGGTTGAAAGAGAGGCTGAAATCC