HAU0715, HAU0715 (genetic_marker) gossypium spp

Marker Overview
NameHAU0715
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CTC)7
PCR ConditionAnnealing temperature: 56.4
Primer 1HAU0715_F: CTTTGCCTTCGGTTCATT
Primer 2HAU0715_R: TGTGGATTTTGCAGAAAGAG
Product Length250
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:27955367..27955616 +
A02chromosomeA02:71497077..71497320 -
CM018217.1chromosomeCM018217.1:13940466..13940715 -
CM018203.1chromosomeCM018203.1:81323001..81323244 -
D5_02chromosomeD5_02:13113141..13113390 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:20905235..20905478 +
D10_02chromosomeD10_02:14050193..14050439 -
CM016615.1chromosomeCM016615.1:36748136..36748382 -
Dt_chr3chromosomeDt_chr3:8211884..8212133 +
At_chr3chromosomeAt_chr3:63186666..63186915 -
scaffold3920_D03supercontigscaffold3920_D03:5688415..5688664 -
A02chromosomeA02:67490337..67490580 -
Ghir_D03chromosomeGhir_D03:21579716..21579961 -
Ghir_A02chromosomeGhir_A02:88759765..88760007 -
D03chromosomeD03:22549894..22550143 -
A02chromosomeA02:89012696..89012939 -
D03chromosomeD03:22700067..22700316 -
A02chromosomeA02:86735126..86735369 -
D03chromosomeD03:21509428..21509677 -
A02chromosomeA02:85372014..85372257 -
At02chromosomeAt02:71814020..71814263 -
scaffold6748supercontigscaffold6748:210531..210774 -
scaffold384supercontigscaffold384:204109..204358 -
Gbar_D03chromosomeGbar_D03:13959992..13960241 -
Gbar_A02chromosomeGbar_A02:81808172..81808415 -
D03chromosomeD03:22187676..22187925 +
A02chromosomeA02:83526406..83526649 -
CM017625.1chromosomeCM017625.1:13808075..13808315 +
CM017611.1chromosomeCM017611.1:85427053..85427296 -
CM017651.1chromosomeCM017651.1:13982802..13983057 +
CM017637.1chromosomeCM017637.1:90191269..90191512 -
CM017703.1chromosomeCM017703.1:14093476..14093725 -
CM017689.1chromosomeCM017689.1:83248450..83248693 -
D03chromosomeD03:14156238..14156487 +
A02chromosomeA02:88637143..88637386 -
Chr02chromosomeChr02:71954919..71955162 -
Chr02chromosomeChr02:81771332..81771575 -
Chr02chromosomeChr02:13676687..13676936 -
B_04chromosomeB_04:53478938..53479181 +
Chr03chromosomeChr03:13974312..13974558 -
chr02chromosomechr02:5125430..5125667 +
Chr_02chromosomeChr_02:4987940..4988186 +
Chr03chromosomeChr03:14397927..14398166 -
Chr02chromosomeChr02:5902661..5902898 +
Chr02chromosomeChr02:5611244..5611490 +
E02chromosomeE02:24680551..24680800 -
F02chromosomeF02:19439302..19439548 -
Chr02chromosomeChr02:97986038..97986290 -
Sequence
>HAU0715 ID=HAU0715; Name=HAU0715; organism=Gossypium spp.; type=genetic_marker; length=250bp
CTTTGCCTTCGGTTCATTCTCCTCCTCCTCCTCCTCCTCCACAGAGAGAG
AAACATTAAAAAACATGGCGGCTTTGACTACATTAACGCCTTGCCAAGCC
ACCTCGCATTTTAATATTAGAATTTCCCATTATTATAATCAAAAGCAAAA
CCAAAATCAAAATGTTTATATTAATCAGACTAAAAGCATTCATAAAGCGA
AGTCCTCTTTGCTTAGTTTTGCTTTCTCTTCTCTTTCTGCAAAATCCACA