HAU0713, HAU0713 (genetic_marker) gossypium spp

Marker Overview
NameHAU0713
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TAAT)6
PCR ConditionAnnealing temperature: 57.2
Primer 1HAU0713_F: GTCGCAGGCTTATCTAATGG
Primer 2HAU0713_R: GGGGTGATTAGAGAGCTGAA
Product Length294
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D04chromosomeD04:9508323..9508616 +
A05chromosomeA05:88882236..88882522 -
CM018218.1chromosomeCM018218.1:8740555..8740848 +
CM018206.1chromosomeCM018206.1:91955080..91955366 -
D5_04chromosomeD5_04:42269025..42269318 -
KI_06chromosomeKI_06:48956194..48956473 +
Chr04_CRI-A2_v1.0.a1chromosomeChr04_CRI-A2_v1.0.a1:86842967..86843253 -
D10_04chromosomeD10_04:8807296..8807580 +
CM016617.1chromosomeCM016617.1:14543584..14543880 +
At_chr9chromosomeAt_chr9:65303414..65303700 +
scaffold71.1supercontigscaffold71.1:1901329..1901622 -
D04chromosomeD04:8702303..8702596 +
A05chromosomeA05:80724660..80724946 -
Ghir_D04chromosomeGhir_D04:9340992..9341285 +
Ghir_A05chromosomeGhir_A05:98094154..98094440 -
D04chromosomeD04:9133307..9133600 +
A05chromosomeA05:99533854..99534140 -
D04chromosomeD04:9240854..9241147 +
A05chromosomeA05:98080306..98080592 -
D04chromosomeD04:8656908..8657201 +
A05chromosomeA05:96098923..96099209 -
At05chromosomeAt05:81472570..81472856 -
scaffold13935supercontigscaffold13935:58529..58815 -
Gbar_D04chromosomeGbar_D04:8809858..8810151 +
Gbar_A05chromosomeGbar_A05:91941327..91941613 -
D04chromosomeD04:8778404..8778697 +
A05chromosomeA05:96991338..96991624 -
CM017626.1chromosomeCM017626.1:8883849..8884142 +
CM017614.1chromosomeCM017614.1:93803284..93803570 -
CM017652.1chromosomeCM017652.1:9113907..9114200 +
CM017640.1chromosomeCM017640.1:102358908..102359194 -
CM017704.1chromosomeCM017704.1:8808577..8808870 +
CM017692.1chromosomeCM017692.1:94808083..94808369 -
D04chromosomeD04:9719370..9719663 +
A05chromosomeA05:99619338..99619624 -
Chr04chromosomeChr04:11748102..11748388 +
Chr04chromosomeChr04:11631016..11631302 +
Chr04chromosomeChr04:42020285..42020578 -
B_02chromosomeB_02:73665024..73665316 -
Chr12chromosomeChr12:9029249..9029542 +
chr12chromosomechr12:8100150..8100434 +
Chr_12chromosomeChr_12:6266275..6266559 +
Chr12chromosomeChr12:8918429..8918722 +
Chr12chromosomeChr12:8282425..8282718 +
Chr12chromosomeChr12:5845376..5845654 +
Chr12chromosomeChr12:7827051..7827332 +
E04chromosomeE04:14837788..14838081 +
F04chromosomeF04:9977773..9978067 +
Chr04chromosomeChr04:17511025..17511310 +
Sequence
>HAU0713 ID=HAU0713; Name=HAU0713; organism=Gossypium spp.; type=genetic_marker; length=294bp
GTCGCAGGCTTATCTAATGGCATCTGTTGGACCATCTATGGCCTCATGCC
ATTTGATCTCTTCCTCCTGGTAATAAGTTAAAACTAAAATAATAATGATG
ATACTAATAATTAATTAACTAATTAATTAAATTAATAATGTGAGTATTGT
GGATGTTTGTAGGTAAGCAATGGGCTAGGAGCAATATTTGGTGTGATTCA
GCTGGGTTTATATTGTTACTTTTACTTCTATGGGGAGAAGAATAGTAAAG
AGGGAGCGAAGAAGCAATCAGAGGTTCAGCTCTCTAATCACCCC