HAU0682, HAU0682 (genetic_marker) gossypium spp

Marker Overview
NameHAU0682
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AAGAA)4
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0682_F: TGCTGGTTGCTCTATGAAAA
Primer 2HAU0682_R: CCACCTCCCATGCTATATTC
Product Length175
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_224supercontigscaffold_224:18389..18563 -
D09chromosomeD09:1634..1808 -
A09chromosomeA09:83037..83226 -
CM018223.1chromosomeCM018223.1:25645..25819 +
CM018210.1chromosomeCM018210.1:11695653..11695827 -
CM018210.1chromosomeCM018210.1:43689..43853 -
D5_09chromosomeD5_09:65727..65900 -
D10_09chromosomeD10_09:40126481..40126655 -
CM016622.1chromosomeCM016622.1:102613989..102614161 +
At_chr6chromosomeAt_chr6:4656661..4656835 +
At_chr6chromosomeAt_chr6:4240277..4240466 +
A09chromosomeA09:13601..13790 -
Scaffold551supercontigScaffold551:33664..33838 -
Ghir_D09chromosomeGhir_D09:29066..29240 -
Ghir_A09chromosomeGhir_A09:26918..27107 -
scaffold180_subseq_1_85117_obj_D09supercontigscaffold180_subseq_1_85117_obj_D09:44515..44689 +
D09chromosomeD09:38388..38562 -
A09chromosomeA09:72605..72794 -
A09chromosomeA09:59626..59800 -
A09chromosomeA09:224769..224958 -
scaffold36203supercontigscaffold36203:8090..8264 +
scaffold19986supercontigscaffold19986:36507..36671 +
scaffold17943supercontigscaffold17943:28377..28551 +
scaffold12171supercontigscaffold12171:31520..31694 +
Scaffold621supercontigScaffold621:54641..54815 +
Scaffold615supercontigScaffold615:47200..47374 +
Gbar_A09chromosomeGbar_A09:62563..62727 -
scaffold100_obj_D07supercontigscaffold100_obj_D07:45958..46132 -
D09chromosomeD09:36331..36505 -
A09chromosomeA09:25671..25845 -
A09chromosomeA09:252351..252515 -
CM017631.1chromosomeCM017631.1:44453..44627 -
CM017618.1chromosomeCM017618.1:73421..73600 -
CM017657.1chromosomeCM017657.1:64217..64391 -
CM017644.1chromosomeCM017644.1:59862..60041 -
CM017709.1chromosomeCM017709.1:62688..62862 -
CM017696.1chromosomeCM017696.1:232186..232350 -
D09chromosomeD09:39797..39971 -
A09chromosomeA09:34634..34808 -
A09chromosomeA09:154466..154655 -
Chr09chromosomeChr09:28976..29155 -
Chr09chromosomeChr09:51185..51359 -
B_09chromosomeB_09:91663..91837 -
Chr06chromosomeChr06:83855..84031 -
chr06chromosomechr06:7941..8115 -
Chr_06chromosomeChr_06:9048..9222 -
Chr06chromosomeChr06:215976..216151 -
Chr06chromosomeChr06:11507..11681 -
Chr06chromosomeChr06:8089..8263 -
Chr06chromosomeChr06:10969..11143 -
E09chromosomeE09:82798663..82798842 +
F09chromosomeF09:29800..29979 -
Chr09chromosomeChr09:1220590..1220763 +
Sequence
>HAU0682 ID=HAU0682; Name=HAU0682; organism=Gossypium spp.; type=genetic_marker; length=175bp
TGCTGGTTGCTCTATGAAAATTTTTATTGGAAAGGAAGCCCATAATCTCT
CGTGCTCCAATGCATTTTGGGCCATTGTATAAATCACATTAGATGACTGG
GGAGAAGAAAAGAAAAGGAAAGAACAGAAACCAACAGCCATTTATGAATA
CGTAGGAATATAGCATGGGAGGTGG