HAU0654, HAU0654 (genetic_marker) gossypium spp

Marker Overview
NameHAU0654
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CAT)7
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0654_F: CAGTATCCACCACCTCTTCC
Primer 2HAU0654_R: GGAGGAGACCAGAGATGAAA
Product Length145
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D07chromosomeD07:56211953..56212097 +
A07chromosomeA07:91867706..91867850 +
CM018221.1chromosomeCM018221.1:54111513..54111657 +
CM018208.1chromosomeCM018208.1:91881522..91881666 +
D5_07chromosomeD5_07:49553687..49553831 +
KI_07chromosomeKI_07:476674..476812 +
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:95349633..95349783 +
D10_07chromosomeD10_07:998617..998764 +
CM016620.1chromosomeCM016620.1:3189402..3189543 -
Dt_chr1chromosomeDt_chr1:85837284..85837428 +
At_chr9chromosomeAt_chr9:47457117..47457261 -
D07chromosomeD07:53327986..53328130 +
A07chromosomeA07:76347931..76348075 +
Ghir_D07chromosomeGhir_D07:57289002..57289146 +
Ghir_A07chromosomeGhir_A07:95786141..95786284 +
D07chromosomeD07:56543369..56543513 +
A07chromosomeA07:94734563..94734707 +
D07chromosomeD07:56920490..56920634 +
A07chromosomeA07:94798815..94798959 +
D07chromosomeD07:53246465..53246609 +
A07chromosomeA07:91311422..91311566 +
Dt07chromosomeDt07:58846634..58846778 +
scaffold8364supercontigscaffold8364:171257..171401 +
scaffold8554supercontigscaffold8554:328781..328925 -
Gbar_D07chromosomeGbar_D07:54501591..54501735 +
Gbar_A07chromosomeGbar_A07:90819524..90819668 +
D07chromosomeD07:55078160..55078304 +
A07chromosomeA07:93133999..93134143 +
CM017629.1chromosomeCM017629.1:55071515..55071659 +
CM017616.1chromosomeCM017616.1:94835421..94835565 +
CM017655.1chromosomeCM017655.1:56077847..56077991 +
CM017642.1chromosomeCM017642.1:97800519..97800663 +
CM017707.1chromosomeCM017707.1:55153506..55153650 +
CM017694.1chromosomeCM017694.1:93165274..93165418 +
D07chromosomeD07:57508410..57508554 +
A07chromosomeA07:96980394..96980538 +
Chr07chromosomeChr07:98681366..98681510 +
Chr07chromosomeChr07:100003719..100003869 +
Chr07chromosomeChr07:1920323..1920467 -
B_07chromosomeB_07:82161853..82162012 -
Chr01chromosomeChr01:53980485..53980635 +
chr01chromosomechr01:43781434..43781590 +
Chr_01chromosomeChr_01:38704432..38704582 +
Chr01chromosomeChr01:53847133..53847280 +
Chr01chromosomeChr01:40802353..40802494 +
Chr01chromosomeChr01:31760607..31760748 +
Chr01chromosomeChr01:39380610..39380751 +
E07chromosomeE07:539877..540021 +
F07chromosomeF07:80460449..80460593 +
Chr07chromosomeChr07:155487641..155487782 +
Sequence
>HAU0654 ID=HAU0654; Name=HAU0654; organism=Gossypium spp.; type=genetic_marker; length=145bp
CAGTATCCACCACCTCTTCCTCCATCATCATCTTCATCATCATCTTCAAG
CCCTTCACCATCATCTTCTGGTACTAAAATTAGTCCTGCTGTTCTTTTCA
TTATAGTAATTTTAGCTGTTCTATTTTTCATCTCTGGTCTCCTCC