HAU0647, HAU0647 (genetic_marker) gossypium spp

Marker Overview
NameHAU0647
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GA)13
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0647_F: TCTCCTTTCTTTCTTTGCTCA
Primer 2HAU0647_R: AGAAAATGCGAAAGACCAAG
Product Length108
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D03chromosomeD03:11640657..11640762 -
A02chromosomeA02:66306402..66306516 -
CM018217.1chromosomeCM018217.1:11233069..11233174 -
CM018203.1chromosomeCM018203.1:76656696..76656804 -
D5_02chromosomeD5_02:10437838..10437945 -
KI_06chromosomeKI_06:34433712..34433814 -
Chr02_CRI-A2_v1.0.a1chromosomeChr02_CRI-A2_v1.0.a1:26312026..26312142 +
D10_02chromosomeD10_02:11181303..11181408 -
Dt_chr3chromosomeDt_chr3:33040835..33040940 +
At_chr3chromosomeAt_chr3:51663624..51663738 +
scaffold19890supercontigscaffold19890:1490..1595 +
D03chromosomeD03:11293986..11294091 -
A02chromosomeA02:62332548..62332662 -
Ghir_D03chromosomeGhir_D03:11340101..11340206 -
D03chromosomeD03:10974481..10974586 -
A02chromosomeA02:84034587..84034701 -
D03chromosomeD03:11385693..11385798 -
A02chromosomeA02:81714285..81714399 -
D03chromosomeD03:11207764..11207869 -
A02chromosomeA02:80354705..80354819 -
scaffold5186supercontigscaffold5186:146083..146188 +
scaffold12270supercontigscaffold12270:53592..53700 +
Gbar_D03chromosomeGbar_D03:11252926..11253031 -
Gbar_A02chromosomeGbar_A02:76990312..76990420 -
D03chromosomeD03:11260800..11260905 -
A02chromosomeA02:78759225..78759333 -
CM017625.1chromosomeCM017625.1:11213364..11213469 -
CM017611.1chromosomeCM017611.1:80411588..80411706 -
CM017651.1chromosomeCM017651.1:11561178..11561283 -
CM017637.1chromosomeCM017637.1:84949567..84949683 -
CM017703.1chromosomeCM017703.1:11357284..11357389 -
CM017689.1chromosomeCM017689.1:78437425..78437533 -
D03chromosomeD03:11499959..11500064 -
A02chromosomeA02:83599114..83599226 -
Chr02chromosomeChr02:66622609..66622715 -
Chr02chromosomeChr02:75438810..75438926 -
Chr02chromosomeChr02:11081226..11081333 -
Chr03chromosomeChr03:11015896..11016001 -
Chr_03chromosomeChr_03:7450809..7450906 -
Chr03chromosomeChr03:11438391..11438486 -
Chr03chromosomeChr03:7630751..7630858 -
Chr03chromosomeChr03:6844012..6844112 -
Chr03chromosomeChr03:8480599..8480704 -
F02chromosomeF02:14670748..14670850 -
Chr02chromosomeChr02:110467675..110467775 +
Sequence
>HAU0647 ID=HAU0647; Name=HAU0647; organism=Gossypium spp.; type=genetic_marker; length=108bp
TCTCCTTTCTTTCTTTGCTCATTCAAAGACCGAGAGAGAGAGAGAGAAAG
AGAGAGATATCCAAAGGCTGCTCAAGCAAAGCTCTAGCCTTGGTCTTTCG
CATTTTCT