HAU0641, HAU0641 (genetic_marker) gossypium spp

Marker Overview
NameHAU0641
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TAGCT)4
PCR ConditionAnnealing temperature: 57.3
Primer 1HAU0641_F: CGTTTTACACGATTCCGTTT
Primer 2HAU0641_R: GAGAGAGCGAAATCGAAGAG
Product Length185
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D02chromosomeD02:1407551..1407733 +
A02chromosomeA02:1084760..1084942 +
CM018216.1chromosomeCM018216.1:1143499..1143681 +
CM018203.1chromosomeCM018203.1:1338370..1338552 +
D5_03chromosomeD5_03:61863334..61863517 -
KI_03chromosomeKI_03:976057..976239 +
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:1067418..1067600 +
D10_03chromosomeD10_03:62326351..62326533 +
CM016616.1chromosomeCM016616.1:152418437..152418619 -
scaffold2234.1supercontigscaffold2234.1:265735..265917 -
scaffold171.1supercontigscaffold171.1:972904..973086 -
D02chromosomeD02:1335133..1335315 +
A02chromosomeA02:1023377..1023559 +
Ghir_D02chromosomeGhir_D02:1367749..1367931 +
Ghir_A02chromosomeGhir_A02:1138972..1139154 +
D02chromosomeD02:1248852..1249034 +
A02chromosomeA02:1091874..1092056 +
D02chromosomeD02:1367679..1367861 +
A02chromosomeA02:1079528..1079710 +
D02chromosomeD02:1209332..1209514 +
A02chromosomeA02:1071098..1071280 +
At02chromosomeAt02:1048678..1048860 +
scaffold9065supercontigscaffold9065:18718..18900 +
scaffold25253supercontigscaffold25253:15539..15721 -
Gbar_D02chromosomeGbar_D02:1313069..1313251 +
Gbar_A02chromosomeGbar_A02:988792..988974 +
D02chromosomeD02:1173432..1173614 +
A02chromosomeA02:1021990..1022172 +
CM017624.1chromosomeCM017624.1:1298753..1298935 +
CM017611.1chromosomeCM017611.1:960006..960188 +
CM017650.1chromosomeCM017650.1:1438077..1438259 +
CM017637.1chromosomeCM017637.1:1117718..1117900 +
CM017702.1chromosomeCM017702.1:1012959..1013141 +
CM017689.1chromosomeCM017689.1:978784..978966 +
D02chromosomeD02:1406443..1406625 +
A02chromosomeA02:1131599..1131781 +
Chr03chromosomeChr03:131458744..131458926 -
Chr03chromosomeChr03:129809635..129809817 -
Chr03chromosomeChr03:1165854..1166036 +
Chr05chromosomeChr05:1220501..1220683 +
chr05chromosomechr05:1104707..1104889 +
Chr_05chromosomeChr_05:1317774..1317956 +
Chr05chromosomeChr05:1440008..1440190 +
Chr05chromosomeChr05:1096727..1096909 +
E03chromosomeE03:1722463..1722645 +
Sequence
>HAU0641 ID=HAU0641; Name=HAU0641; organism=Gossypium spp.; type=genetic_marker; length=185bp
CGTTTTACACGATTCCGTTTATAGCTTAGCTTTGCTTAGCTTCTTTTAGA
TCAAAACTCTCATTGAAACACCATATTAATGAGTTAAAAATCTTTACCGG
AAATGGGCAAACTTGTTCCCAATCGCTCGTTTTTCCTTTTATTTTTCCTT
TTTCTTCACTTTCTCCTCTTCGATTTCGCTCTCTC