HAU0640, HAU0640 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0640
Genbank ID	N/A
Type	SSR
Species	Gossypium spp.
Source Type	EST
Repeat Motif	(CA)15
PCR Condition	Annealing temperature: 56.9
Primer 1	HAU0640_F: CCTGCACTACAAATCCCTCT
Primer 2	HAU0640_R: CTTCCCCTTCTCTTCTGTGA
Product Length	100
Publication	[view all]
Comment	Primer data obtained in 2012

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
D01	chromosome	D01:8888386..8888481 +
D5_01	chromosome	D5_01:10822999..10823098 +
Dt_chr2	chromosome	Dt_chr2:43993345..43993440 +
D01	chromosome	D01:10455739..10455834 +
Ghir_D01	chromosome	Ghir_D01:11763307..11763402 +
D01	chromosome	D01:11519092..11519187 +
D01	chromosome	D01:11293274..11293369 +
D01	chromosome	D01:11653154..11653249 +
Dt01	chromosome	Dt01:10509978..10510065 +
scaffold5474	supercontig	scaffold5474:293184..293271 +
scaffold3489	supercontig	scaffold3489:95857..95944 -
Gbar_D01	chromosome	Gbar_D01:11893187..11893274 +
D01	chromosome	D01:11971919..11972014 +
Chr01	chromosome	Chr01:10704109..10704208 +
Chr_02	chromosome	Chr_02:9256804..9256899 +
Chr02	chromosome	Chr02:10419271..10419459 +

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Sequence

>HAU0640 ID=HAU0640; Name=HAU0640; organism=Gossypium spp.; type=genetic_marker; length=100bp
CCTGCACTACAAATCCCTCTCTAACCCTTTCGTTCCCTTCATCCAAACCA
CACACACACACACACACACACACACACAACTCACAGAAGAGAAGGGGAAG

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HAU0640, HAU0640 (genetic_marker) gossypium spp