HAU0628, HAU0628 (genetic_marker) gossypium spp

Marker Overview
NameHAU0628
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(CA)7
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0628_F: CCCATAAAGCTGCTTATTTCA
Primer 2HAU0628_R: ATGACAAGCTTTGAGGAAGG
Product Length130
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:67732550..67732678 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D06chromosomeD06:67717185..67717313 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:61978772..61978900 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:59990171..59990299 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_06chromosomeD10_06:976015..976143 -Gossypium turneri (D10) genome NSF_v1_a2n/a
At_chr9chromosomeAt_chr9:84453973..84454101 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D06chromosomeD06:63325343..63325471 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:65938417..65938545 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:64527693..64527821 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:65333222..65333350 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:62248731..62248859 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt06chromosomeDt06:65644519..65644647 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold8883supercontigscaffold8883:546870..546998 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:62175202..62175330 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:62004868..62004996 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:62367976..62368104 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:66036451..66036579 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017706.1chromosomeCM017706.1:62510985..62511113 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:65776987..65777115 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:59597958..59598086 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr10chromosomeChr10:62241990..62242118 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr10chromosomechr10:48127089..48127217 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr10chromosomeChr10:63854696..63854828 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:41031755..41031883 +Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:35050505..35050633 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>HAU0628 ID=HAU0628; Name=HAU0628; organism=Gossypium spp.; type=genetic_marker; length=130bp
CCCATAAAGCTGCTTATTTCATTCACACACGCACACAGGGTAACGCCATG
GCTACCATACTAGGACCATCCTCCGCCGCAATCTCAGCATCTTGTGGGTC
ACTCATTTACCCTTCCTCAAAGCTTGTCAT