HAU0614, HAU0614 (genetic_marker) gossypium spp

Marker Overview


Name	HAU0614
Genbank ID	N/A
Type	SSR
Species	Gossypium spp.
Source Type	EST
Repeat Motif	(ATTA)5
PCR Condition	Annealing temperature: 56.9
Primer 1	HAU0614_F: GGGAATTGTGAGTTTCCAAC
Primer 2	HAU0614_R: CGTTGGCCGTTAAATAACTT
Product Length	272
Publication	[view all]
Comment	Primer data obtained in 2012

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
CM018219.1	chromosome	CM018219.1:60905780..60906124 +	Gossypium barbadense (AD2) '3-79' genome HGS_v1.1	n/a
D5_05	chromosome	D5_05:55355491..55355761 +	Gossypium raimondii (D5) 'D5-4' genome NSF_v1	n/a
Gbar_D05	chromosome	Gbar_D05:62200603..62200947 +	Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1	n/a
Chr05	chromosome	Chr05:55777051..55777322 +	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr05	chromosome	Chr05:55810949..55811215 +	Gossypium raimondii (D5) 'Grai D502' genome HAU_v1	n/a
Chr09	chromosome	Chr09:41754499..41754760 +	Gossypium gossypioides (D6) genome ISU_v1	n/a

Publications


Year	Publication
2011	Yu Y, Yuan D, Liang S, Li X, Wang X, Lin Z, Zhang X. Genome structure of cotton revealed by a genome-wide SSR genetic map constructed from a BC1 population between gossypium hirsutum and G. barbadense. BMC genomics. 2011; 12:15

Sequence

>HAU0614 ID=HAU0614; Name=HAU0614; organism=Gossypium spp.; type=genetic_marker; length=272bp
GGGAATTGTGAGTTTCCAACAGGGCATTGAAGTGGAAAAACAAAGGGGAA
AAGATTTGAAATTTTTTTGCAAATTTTCTTCTTTGTATCTAATATTAATT
AATTATTAATTTATTATTATATAGAAGGGATAGGTGGAGTCGTTATTAGT
AGATTGTTGATTTTACCTTATAATTTGTCTGTCCTGTTTGTATATTTGTT
ACAATATTCATATGGGGAAGACAACTTTTTATTATATGTTTAGCTTTTAT
TGAAGTTATTTAACGGCCAACG

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HAU0614, HAU0614 (genetic_marker) gossypium spp