HAU0603, HAU0603 (genetic_marker) gossypium spp

Marker Overview
NameHAU0603
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AG)7
PCR ConditionAnnealing temperature: 56.0
Primer 1HAU0603_F: GGTCAGGGTTTAAATGCAAC
Primer 2HAU0603_R: CAAATCAACACACAAGTAAACC
Product Length273
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D09chromosomeD09:51281849..51282117 -
A09chromosomeA09:79428453..79428724 -
CM018223.1chromosomeCM018223.1:48370733..48371001 -
CM018210.1chromosomeCM018210.1:74658207..74658481 -
D5_09chromosomeD5_09:41663252..41663524 -
KI_09chromosomeKI_09:36945490..36945760 -
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:82574342..82574613 -
D10_09chromosomeD10_09:2197662..2197931 +
scaffold251.1supercontigscaffold251.1:395541..395812 +
scaffold288.1supercontigscaffold288.1:379441..379709 -
D09chromosomeD09:48605116..48605384 -
A09chromosomeA09:72509970..72510241 -
Ghir_D09chromosomeGhir_D09:50599133..50599401 -
Ghir_A09chromosomeGhir_A09:79643419..79643690 -
A09chromosomeA09:80865695..80865966 +
D09chromosomeD09:49880700..49880968 -
D09chromosomeD09:50347478..50347746 -
A09chromosomeA09:81088297..81088568 -
D09chromosomeD09:48441875..48442143 -
A09chromosomeA09:77658308..77658579 -
At09chromosomeAt09:76141366..76141640 -
scaffold18653supercontigscaffold18653:118709..118977 +
scaffold7585supercontigscaffold7585:139818..140092 -
Gbar_D09chromosomeGbar_D09:49243248..49243516 -
Gbar_A09chromosomeGbar_A09:75486778..75487052 -
D09chromosomeD09:51617442..51617710 -
A09chromosomeA09:76905340..76905614 -
CM017631.1chromosomeCM017631.1:49338239..49338507 -
CM017618.1chromosomeCM017618.1:76845624..76845895 -
CM017657.1chromosomeCM017657.1:50882829..50883097 -
CM017644.1chromosomeCM017644.1:80230692..80230963 -
CM017709.1chromosomeCM017709.1:50046082..50046350 -
CM017696.1chromosomeCM017696.1:76992591..76992862 -
D09chromosomeD09:52208155..52208423 -
A09chromosomeA09:82905959..82906230 -
Chr09chromosomeChr09:81986060..81986331 -
Chr09chromosomeChr09:84703094..84703365 -
Chr09chromosomeChr09:47887393..47887665 -
B_09chromosomeB_09:68266370..68266642 -
Chr06chromosomeChr06:48704229..48704504 -
chr06chromosomechr06:40520352..40520624 -
Chr_06chromosomeChr_06:34142153..34142425 -
Chr06chromosomeChr06:49806962..49807235 -
Chr06chromosomeChr06:37744419..37744694 -
Chr06_3451692chromosomeChr06_3451692:5391..5660 +
Chr06chromosomeChr06:35061706..35061984 -
E09chromosomeE09:2858118..2858386 +
F09chromosomeF09:68559785..68560056 -
Sequence
>HAU0603 ID=HAU0603; Name=HAU0603; organism=Gossypium spp.; type=genetic_marker; length=273bp
GGTCAGGGTTTAAATGCAACAGTGCTGTATGGAAAGCACTGAAGACCATT
AATCCAGCAAAGGAGAAGAGTCCATGGATTGATGAAATTGATGAATATCC
GGTTTATGTGCCTAAGGTGGCCACTGTTTTTTTTTTTTTTTCTTCCCAGA
AAGCCACATAATTTTCATCATTCAAAGGAAGACAGTAGAGAGAAAGAGAG
GACATAATTAGTGATTATTAGAACTATGATTTATTTTTTATTTTTTTTAC
AGGTTTACTTGTGTGTTGATTTG