HAU0592, HAU0592 (genetic_marker) gossypium spp

Marker Overview
NameHAU0592
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(ATT)6
PCR ConditionAnnealing temperature: 54.5
Primer 1HAU0592_F: CTTAGCCATGAAACATGCAG
Primer 2HAU0592_R: TCAATACCACAACAACAAAG
Product Length266
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
A12chromosomeA12:100639970..100640352 -
CM018213.1chromosomeCM018213.1:97564912..97565294 -
D5_12chromosomeD5_12:1904551..1904816 +
Chr12_CRI-A2_v1.0.a1chromosomeChr12_CRI-A2_v1.0.a1:2024599..2024924 +
D10_12chromosomeD10_12:52775981..52776242 -
CM016625.1chromosomeCM016625.1:2596867..2597123 +
scaffold3976.1supercontigscaffold3976.1:16859..17184 +
A12chromosomeA12:85569818..85570200 -
Ghir_A12chromosomeGhir_A12:105488055..105488437 -
A12chromosomeA12:105554028..105554410 -
A12chromosomeA12:103627658..103628040 -
A12chromosomeA12:100558918..100559300 -
At12chromosomeAt12:91426322..91426582 -
At12chromosomeAt12:91424661..91425043 -
scaffold10987supercontigscaffold10987:88678..88938 -
scaffold10987supercontigscaffold10987:87017..87399 -
Gbar_A12chromosomeGbar_A12:100058588..100058970 -
A12chromosomeA12:99609344..99609726 -
CM017621.1chromosomeCM017621.1:100792467..100792849 -
CM017647.1chromosomeCM017647.1:104660971..104661353 -
CM017699.1chromosomeCM017699.1:99924191..99924573 -
A12chromosomeA12:107221094..107221476 -
Chr12chromosomeChr12:108234688..108235070 -
Chr12chromosomeChr12:115209697..115210079 -
Chr12chromosomeChr12:55835365..55835630 -
B_12chromosomeB_12:85042699..85042959 +
Chr08chromosomeChr08:56292256..56293198 -
chr08chromosomechr08:43934340..43934759 -
Chr_08chromosomeChr_08:41574973..41575233 -
Chr08chromosomeChr08:57840472..57840732 -
Chr08chromosomeChr08:40711581..40711910 -
Chr08chromosomeChr08:32010702..32010962 -
Chr08chromosomeChr08:39201404..39201730 -
E12chromosomeE12:112285619..112285879 -
F12chromosomeF12:89447176..89447561 -
Chr12chromosomeChr12:171979075..171979338 -
Sequence
>HAU0592 ID=HAU0592; Name=HAU0592; organism=Gossypium spp.; type=genetic_marker; length=266bp
CTTAGCCATGAAACATGCAGCGAAGGTGGCGACGAGTGAGGGAGGTTCCA
CTCGCATTGCGCTGGCCAAACTTGTCGAGTCATGGAAGCAAAAATGACTC
GGACTGAATCGCCAAACCCCCACGTAGGTTGTGAGGTAAAACCCATGGTC
AATAAGTGAAACACGAGCGTTCGACTCGGTCGTTATAATCCCTATTGTGC
TGATTCGACAAACTGAAAACGTTGTTCGAATTATTATTTTTATTATCTTT
GTTGTTGTGGTATTGA