HAU0308, HAU0308 (genetic_marker) gossypium spp

Marker Overview
NameHAU0308
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AAAAAG)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0308_F: AATCACGGTGAAAGAAGAGG
Primer 2HAU0308_R: GATCCAGCTATATGCCCATC
Product Length274
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A09chromosomeA09:71604669..71605079 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018210.1chromosomeCM018210.1:67145818..67146229 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr09_CRI-A2_v1.0.a1chromosomeChr09_CRI-A2_v1.0.a1:74316123..74316532 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:67566557..67566967 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A09chromosomeA09:66552794..66553204 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A09chromosomeGhir_A09:71398307..71398716 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A09chromosomeA09:73035842..73036252 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A09chromosomeA09:73157043..73157453 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A09chromosomeA09:69777054..69777464 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At09chromosomeAt09:69278166..69278577 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold770supercontigscaffold770:34508..34919 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A09chromosomeGbar_A09:67579118..67579529 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A09chromosomeA09:69072331..69072741 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017618.1chromosomeCM017618.1:69009278..69009688 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017644.1chromosomeCM017644.1:71874756..71875166 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017696.1chromosomeCM017696.1:69059828..69060238 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A09chromosomeA09:74541877..74542287 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr09chromosomeChr09:73665265..73665677 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr09chromosomeChr09:76608998..76609407 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
F09chromosomeF09:61462003..61462410 -Gossypium longicalyx (F1) genome NSF_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch09_At.09N/A108HAU0308View
Sequence
>HAU0308 ID=HAU0308; Name=HAU0308; organism=Gossypium spp.; type=genetic_marker; length=274bp
AATCACGGTGAAAGAAGAGGATCGGATTCTGCACTTCAAAGGAAATAAAA
AGAAAAAAAAAAAAGAAAAGAAAAATCCGATCTTTGGGTCTGTGCCGGTC
CGGACAAGAAAAAGGAGAGCAAAGAAACCGAGCAAAGATTCTGGCAAAGC
GAATGGCTCAAACCATCTCATACATTACCGGCTCTCAACTCCTTCCCCTT
AAACGCCTTCCGAACATCGCCATCATACATGTCAGGGATGATGAAAGGAG
TTGTGATGGGCATATAGCTGGATC