HAU0304, HAU0304 (genetic_marker) gossypium spp

Marker Overview
NameHAU0304
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TA)13
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0304_F: AAGAAAAAGACGGTGACTGG
Primer 2HAU0304_R: AAGACCCGGATTTTGATACA
Product Length267
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:2401531..2402033 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:2455442..2455950 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:2194366..2194864 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_05chromosomeKI_05:1837914..1838421 +Gossypioides kirkii genome ISU_v3n/a
D10_05chromosomeD10_05:58398537..58399043 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:67157258..67157760 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:49877680..49878188 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:2240515..2241017 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold1243_A05supercontigscaffold1243_A05:65948..66456 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:2376366..2376868 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:2486486..2486994 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:2214801..2215303 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:2391368..2391876 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:2285773..2286275 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:2461553..2462061 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:2290139..2290641 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:2620023..2620531 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7279supercontigscaffold7279:116254..116752 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:2238038..2238536 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:2419889..2420387 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:2258023..2258525 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:2432873..2433383 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:2242337..2242841 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:2493951..2494463 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
D05chromosomeD05:2311184..2311686 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:2549021..2549529 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:2578730..2579244 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:2070112..2070616 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:2032803..2033299 +Gossypium aridum (D4) genome ISU_v1n/a
Chr09chromosomeChr09:2043706..2044213 +Gossypium lobatum (D7) genome ISU_v1n/a
E05chromosomeE05:2725480..2725991 +Gossypium stocksii (E1) genome NSF_v1n/a
F05chromosomeF05:2162206..2162718 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU0304 ID=HAU0304; Name=HAU0304; organism=Gossypium spp.; type=genetic_marker; length=267bp
AAGAAAAAGACGGTGACTGGATGCTGGTGGGCGATGTTCCTTGGGAGATG
TTTACCGACTCGTGTAAGAGATTGAGGATCATGAAGAGTACAGAGGCTAT
CGGCCTAGCTCCGAGGGCTATGGAGAAGTGCAAAAACCGTACCTAGACGA
TTCAATGTCACTGTAACTACTGAAAGCATAAGATGGAAGTTTGCTACTAT
ATATATTTATATATATATATATGTCGAATGTCAAAAGCCTTTGACTATGT
ATCAAAATCCGGGTCTT