HAU0302, HAU0302 (genetic_marker) gossypium spp

Marker Overview
NameHAU0302
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TG)7
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0302_F: GAAAGGAACGTGGAGAAAGA
Primer 2HAU0302_R: CAGAGGAAGGGCTAAACAAA
Product Length287
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:102890..103188 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:343277..343575 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:410040..410338 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr1chromosomeDt_chr1:30974433..30974731 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:94226..94524 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:457594..457893 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:356560..356858 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:454020..454318 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
At08chromosomeAt08:96753..97051 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6609supercontigscaffold6609:96753..97051 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:356488..356786 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:345082..345380 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:370341..370639 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017643.1chromosomeCM017643.1:368313..368611 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:393241..393539 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:448005..448303 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:397805..398103 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:405024..405322 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:377413..377706 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:376935..377546 -Gossypium aridum (D4) genome ISU_v1n/a
Chr04chromosomeChr04:393178..393470 -Gossypium lobatum (D7) genome ISU_v1n/a
E08chromosomeE08:411076..411369 -Gossypium stocksii (E1) genome NSF_v1n/a
F08chromosomeF08:187220..187511 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr08chromosomeChr08:198028383..198028675 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0302 ID=HAU0302; Name=HAU0302; organism=Gossypium spp.; type=genetic_marker; length=287bp
GAAAGGAACGTGGAGAAAGAAGATAAGAACGATACGTGGCACCGCCTTGA
ACGGAGCAGCGGCAAGTTTATGAGGAGGTTCAGGTTGCCGGAAAATGTTA
AGATGGATCAAGTTAAGGCTTCAATGGAAAATGGGGTGCTTACTGTGACT
GTTCCGAAAATGGAAGTTAAAAAGCCTGATGTCAAGGCTATTGATATTTC
TGGTTAAAATATGTTTATTGTGTGTATGTGTGGAGTTTCTGAACTTAAAA
CAATAAAATTTACTATCTTTGTTTAGCCCTTCCTCTG