HAU0301, HAU0301 (genetic_marker) gossypium spp

Marker Overview
NameHAU0301
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(ATGT)4
PCR ConditionAnnealing temperature: 56.6
Primer 1HAU0301_F: TCCAGAGCAAAGTTCAATCA
Primer 2HAU0301_R: CGTTGAATTCATCCTATTTGTC
Product Length259
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A11chromosomeA11:14397372..14397630 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:13992639..13992897 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:109688736..109688994 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr11chromosomeAt_chr11:94070740..94070998 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A11chromosomeA11:14076182..14076440 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A11chromosomeGhir_A11:14454970..14455227 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A11chromosomeA11:13997241..13997499 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:14196873..14197131 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:14561073..14561331 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold18738supercontigscaffold18738:55412..55670 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A11chromosomeGbar_A11:13743374..13743632 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A11chromosomeA11:14010432..14010690 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017620.1chromosomeCM017620.1:14327269..14327527 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017646.1chromosomeCM017646.1:14395513..14395771 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017698.1chromosomeCM017698.1:14250442..14250700 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A11chromosomeA11:14708720..14708978 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:14964244..14964502 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:14618121..14618379 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Sequence
>HAU0301 ID=HAU0301; Name=HAU0301; organism=Gossypium spp.; type=genetic_marker; length=259bp
TCCAGAGCAAAGTTCAATCAGGTCTTCAATCTAACACCAAAATTCAGTAG
GGTCTTCAATCAGGTCTTATGATCCCTGAAGATCAGATTTCAGCGATTCC
AGCTGTCCCATTTCAACAATATGTAACAGTAGTCTTCATATACTGTCTAT
AATTTGCAGATTTTTCTCTGGGGCAAATCTCAATATGTCCAACTTGTAAT
GTGATGTATGTAATGTATGGATGAGTAATTTATTGATGACAAATAGGATG
AATTCAACG