HAU0297, HAU0297 (genetic_marker) gossypium spp

Marker Overview
NameHAU0297
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAG)5
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0297_F: GGCCAGATAATTTGGACAAC
Primer 2HAU0297_R: TAACAGCTTCGCCTTCTTCT
Product Length177
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:59758743..59758919 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:100078110..100078286 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:57050171..57050347 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:99878189..99878365 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_11chromosomeKI_11:44750276..44750449 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:16916625..16916801 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:56101510..56101686 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:124311147..124311370 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr8chromosomeDt_chr8:36517369..36517545 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr1chromosomeAt_chr1:10511995..10512171 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:54928496..54928672 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:79818381..79818557 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:59639952..59640128 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:108933530..108933706 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:58963778..58963954 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:107588797..107588973 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:59610630..59610806 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:104995530..104995706 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:56884610..56884786 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:102124650..102124826 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold993supercontigscaffold993:114096..114272 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15872supercontigscaffold15872:50635..50811 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:56793494..56793670 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:98095328..98095504 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:59565680..59565856 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:101555710..101555886 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:58954465..58954641 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:105347693..105347869 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:60411469..60411645 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:111875103..111875279 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:56569606..56569782 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:100406729..100406905 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:59428458..59428634 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:109739973..109740149 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:114916837..114917013 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:111878447..111878623 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:9960807..9960983 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:85471080..85471255 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:56669467..56669643 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_07chromosomeChr_07:38037008..38037184 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:57419814..57419990 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:34216458..34216634 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:30218596..30218772 +Gossypium gossypioides (D6) genome ISU_v1n/a
E11chromosomeE11:96846882..96847058 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:85031559..85031735 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:19458259..19458435 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0297 ID=HAU0297; Name=HAU0297; organism=Gossypium spp.; type=genetic_marker; length=177bp
GGCCAGATAATTTGGACAACTTAAGAAAATTGGCAGAGCAATTCCAGAAG
CAGGCACCTGCTGCTACCGGTATTGGTACTGGTGTAACCACCACTCAAGA
AGAGGAGGACGAGGAGGTACCAGATCTTGTACCTGGTGAGACCTTTGAAG
CTGCAGCAGAAGAAGGCGAAGCTGTTA