HAU0291, HAU0291 (genetic_marker) gossypium spp

Marker Overview
NameHAU0291
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAC)6
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0291_F: ATTCTGATGCTGACGACTCA
Primer 2HAU0291_R: AGTCTTGAGCTTCGTGTTCC
Product Length155
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:13049126..13049279 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A11chromosomeA11:14402826..14402980 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018225.1chromosomeCM018225.1:12140777..12140930 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018212.1chromosomeCM018212.1:13998095..13998249 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:53981227..53981380 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:9393556..9393709 +Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:109683382..109683536 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:11852539..11852692 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:18368567..18368720 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr11chromosomeAt_chr11:94076194..94076348 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:12644494..12644647 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:14081636..14081790 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:12592645..12592798 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:14460419..14460573 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:12313907..12314060 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:14002695..14002849 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:12645465..12645618 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:14202326..14202480 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:12413987..12414140 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:14566527..14566681 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt11chromosomeDt11:13828276..13828429 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold4720supercontigscaffold4720:361403..361556 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold18738supercontigscaffold18738:46541..46695 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:12427339..12427492 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:13748830..13748984 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:12323624..12323777 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:14015888..14016042 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:12300396..12300525 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:14332721..14332875 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:12591911..12592064 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:14400945..14401099 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:12413160..12413313 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:14255896..14256050 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:12836939..12837092 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:14714174..14714328 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:14969694..14969848 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:14623579..14623733 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:51462615..51462768 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:13461280..13461430 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:12037809..12037962 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:10234239..10234392 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:10631789..10631942 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:12186894..12187047 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:9597866..9598019 +Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:8528712..8528865 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:9870049..9870202 +Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:15167566..15167719 +Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:12170481..12170635 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:165730319..165730472 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0291 ID=HAU0291; Name=HAU0291; organism=Gossypium spp.; type=genetic_marker; length=155bp
ATTCTGATGCTGACGACTCAGAGGACGCCGTCGTAGACGACGACGAGGAC
GACTTCGACCACGAAAACGATTCCTCCATCCGCACTTTCACGACTGCTCG
CCTAGAGTCTGGCGGGGGCGGCTCTGGTTCGGGTCGGAACACGAAGCTCA
AGACT