HAU0289, HAU0289 (genetic_marker) gossypium spp

Marker Overview
NameHAU0289
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAT)8
PCR ConditionAnnealing temperature: 57.1
Primer 1HAU0289_F: GAAATGGTAGGCATGGTTTC
Primer 2HAU0289_R: AGCATATTTGCAAGCTCTCC
Product Length196
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D13chromosomeD13:45520283..45520481 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A13chromosomeA13:82919434..82919629 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018227.1chromosomeCM018227.1:41885737..41885935 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018214.1chromosomeCM018214.1:87424877..87425075 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_13chromosomeD5_13:40782941..40783133 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_13chromosomeKI_13:31869256..31869436 +Gossypioides kirkii genome ISU_v3n/a
Chr13_CRI-A2_v1.0.a1chromosomeChr13_CRI-A2_v1.0.a1:100895365..100895560 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr13chromosomeAt_chr13:13349053..13349248 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D13chromosomeD13:41388333..41388531 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A13chromosomeA13:59613486..59613681 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D13chromosomeGhir_D13:44773386..44773584 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A13chromosomeGhir_A13:86748181..86748376 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D13chromosomeD13:46018073..46018271 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A13chromosomeA13:89759227..89759422 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D13chromosomeD13:44911357..44911555 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A13chromosomeA13:87804833..87805028 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D13chromosomeD13:41832429..41832627 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A13chromosomeA13:86477685..86477880 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At13chromosomeAt13:64734672..64734870 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At13chromosomeAt13:64720685..64721162 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5061supercontigscaffold5061:102731..102929 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold5061supercontigscaffold5061:88744..89221 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2782supercontigscaffold2782:61173..61371 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold2782supercontigscaffold2782:57554..57752 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D13chromosomeGbar_D13:41611462..41611660 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A13chromosomeGbar_A13:88682621..88682819 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D13chromosomeD13:43003452..43003650 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A13chromosomeA13:91680966..91681164 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017635.1chromosomeCM017635.1:42805580..42805778 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017622.1chromosomeCM017622.1:89117837..89118032 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017661.1chromosomeCM017661.1:45674332..45674521 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017648.1chromosomeCM017648.1:93969883..93970078 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017713.1chromosomeCM017713.1:42914161..42914359 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017700.1chromosomeCM017700.1:89690113..89690311 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D13chromosomeD13:45913890..45914088 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A13chromosomeA13:90020465..90020660 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr13chromosomeChr13:94970499..94970694 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr13chromosomeChr13:99035537..99035732 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr13chromosomeChr13:40824965..40825157 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_13chromosomeB_13:25039977..25040178 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr13chromosomeChr13:42069147..42069339 +Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:55866629..55866827 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:55996322..55996520 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:55936308..55936505 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr09chromosomeChr09:55814860..55815056 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr13chromosomeChr13:44322435..44322672 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr13chromosomeChr13:28442931..28443114 +Gossypium aridum (D4) genome ISU_v1n/a
Chr13chromosomeChr13:21980479..21980664 +Gossypium gossypioides (D6) genome ISU_v1n/a
Chr13chromosomeChr13:27751917..27752108 +Gossypium lobatum (D7) genome ISU_v1n/a
E13chromosomeE13:87573505..87573685 +Gossypium stocksii (E1) genome NSF_v1n/a
F13chromosomeF13:74815817..74816006 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr13chromosomeChr13:39420083..39420263 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0289 ID=HAU0289; Name=HAU0289; organism=Gossypium spp.; type=genetic_marker; length=196bp
GAAATGGTAGGCATGGTTTCCATTGGAGATGTGGTTCGTGCTGTGGTGAG
CGAGCCCCGTGCAGAGCTGGACCGCTTGAATGCTTACATACAGGGAGGTT
ACTAGATGATGATGATGATGATGATGATGGAATATAGTGTATGTTTCACT
TGTTGGACTTAAGCAAGCAAGCAAGGGGAGAGCTTGCAAATATGCT