HAU0285, HAU0285 (genetic_marker) gossypium spp

Marker Overview
NameHAU0285
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAT)5
PCR ConditionAnnealing temperature: 56.7
Primer 1HAU0285_F: TGGTGGAAGTAGTGGCATAA
Primer 2HAU0285_R: AAGGAGCAATCAAACCTCAC
Product Length287
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D11chromosomeD11:2869532..2869817 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018212.1chromosomeCM018212.1:3002357..3002643 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018225.1chromosomeCM018225.1:2663089..2663375 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_11chromosomeD5_11:63195656..63195942 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_11chromosomeKI_11:2415104..2415390 -Gossypioides kirkii genome ISU_v3n/a
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:121490858..121491144 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_11chromosomeD10_11:2620140..2620429 -Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016624.1chromosomeCM016624.1:3445020..3445306 -Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr7chromosomeDt_chr7:7487647..7487933 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D11chromosomeD11:2835117..2835403 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A11chromosomeA11:2574786..2575072 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D11chromosomeGhir_D11:2775846..2776132 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A11chromosomeGhir_A11:3002385..3002671 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D11chromosomeD11:2725107..2725393 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A11chromosomeA11:2890892..2891178 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D11chromosomeD11:2796640..2796926 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A11chromosomeA11:2881854..2882140 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D11chromosomeD11:2742300..2742586 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A11chromosomeA11:3030653..3030939 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold8063supercontigscaffold8063:50079..50365 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold6973supercontigscaffold6973:226240..226526 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D11chromosomeGbar_D11:2715605..2715891 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A11chromosomeGbar_A11:2626720..2627006 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D11chromosomeD11:2724727..2725013 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A11chromosomeA11:3005252..3005538 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017633.1chromosomeCM017633.1:2645216..2645502 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017620.1chromosomeCM017620.1:3039131..3039420 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017659.1chromosomeCM017659.1:2649037..2649323 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017646.1chromosomeCM017646.1:3067864..3068150 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017711.1chromosomeCM017711.1:2707376..2707662 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017698.1chromosomeCM017698.1:3007004..3007290 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D11chromosomeD11:2770599..2770885 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A11chromosomeA11:3051464..3051750 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr11chromosomeChr11:3025895..3026181 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr11chromosomeChr11:2947640..2947926 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr11chromosomeChr11:60679138..60679424 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_11chromosomeB_11:3043759..3044045 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr07chromosomeChr07:2569072..2569358 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr07chromosomechr07:2413931..2414220 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_07chromosomeChr_07:2365141..2365430 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr07chromosomeChr07:2752181..2752467 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr07chromosomeChr07:2091227..2091516 -Gossypium aridum (D4) genome ISU_v1n/a
Chr07chromosomeChr07:2060081..2060367 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr07chromosomeChr07:2206735..2207024 -Gossypium lobatum (D7) genome ISU_v1n/a
E11chromosomeE11:3144232..3144518 -Gossypium stocksii (E1) genome NSF_v1n/a
F11chromosomeF11:2542789..2543078 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr11chromosomeChr11:183245225..183245511 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0285 ID=HAU0285; Name=HAU0285; organism=Gossypium spp.; type=genetic_marker; length=287bp
TGGTGGAAGTAGTGGCATAAGTGAAGGACATTTAAATATGTTAGCTGGAT
TGAATCCTTATAGACAAGACTCCGGTGGCACCGGCGTTTCGGAATCTCAA
GTGAGTGGCTCACATTCACACCACGGTGGTGGAGGTGGCGGCGATGAATG
ACGTGATTTACAAACCAATAGTGTCATGCGATCGTAGAGATGATGATGAT
GATCATCGAGCAAAGCATCATCTTTGCTTTCTTTTGATCAAGTTGTGTAG
TTTGATGTGTAACACACGTGAGGTTTGATTGCTCCTT