HAU0283, HAU0283 (genetic_marker) gossypium spp

Marker Overview
NameHAU0283
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GATA)7
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0283_F: GTGATAGGCAAAGGAGCATT
Primer 2HAU0283_R: AGAAGTTTGGTTCAGGCATC
Product Length167
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D06chromosomeD06:63561009..63561174 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A06chromosomeA06:115936970..115937134 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018220.1chromosomeCM018220.1:58371545..58371708 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018207.1chromosomeCM018207.1:111755693..111755860 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_06chromosomeD5_06:56676382..56676544 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr06_CRI-A2_v1.0.a1chromosomeChr06_CRI-A2_v1.0.a1:125294973..125295139 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_06chromosomeD10_06:4610541..4610705 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016619.1chromosomeCM016619.1:7521476..7521635 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr7chromosomeAt_chr7:28997659..28997823 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr7chromosomeAt_chr7:1676387..1676552 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
scaffold100280supercontigscaffold100280:77..241 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
scaffold4164_D06supercontigscaffold4164_D06:47541..47706 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A06chromosomeA06:98809930..98810094 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D06chromosomeGhir_D06:62194440..62194604 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A06chromosomeGhir_A06:119206208..119206370 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D06chromosomeD06:61074122..61074287 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A06chromosomeA06:121852346..121852510 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D06chromosomeD06:61459132..61459297 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A06chromosomeA06:121217675..121217838 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D06chromosomeD06:58657346..58657511 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A06chromosomeA06:117035910..117036074 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold7190supercontigscaffold7190:369350..369517 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold16059supercontigscaffold16059:55281..55444 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D06chromosomeGbar_D06:58473008..58473171 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A06chromosomeGbar_A06:110774701..110774867 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D06chromosomeD06:58476413..58476576 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A06chromosomeA06:113822294..113822461 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017628.1chromosomeCM017628.1:59012361..59012524 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017615.1chromosomeCM017615.1:116788913..116789077 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017654.1chromosomeCM017654.1:62310918..62311082 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017641.1chromosomeCM017641.1:122209127..122209292 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017693.1chromosomeCM017693.1:115024336..115024503 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D06chromosomeD06:62068214..62068379 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A06chromosomeA06:123348621..123348785 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:123345092..123345258 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr06chromosomeChr06:124822396..124822562 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr06chromosomeChr06:56309176..56309339 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_06chromosomeB_06:5229292..5229456 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr10chromosomeChr10:58547877..58548040 -Gossypium thurberi (D1-5) genome CRI_v1n/a
Chr_10chromosomeChr_10:40394947..40395210 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr10chromosomeChr10:60223046..60223214 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr10chromosomeChr10:38165201..38165446 -Gossypium aridum (D4) genome ISU_v1n/a
Chr10chromosomeChr10:39496088..39496344 -Gossypium lobatum (D7) genome ISU_v1n/a
Chr06chromosomeChr06:7038874..7039041 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Emian-22 x 3-79, BC1 (2015)AD_ch06_At.06N/A119.5HAU0283aView
Sequence
>HAU0283 ID=HAU0283; Name=HAU0283; organism=Gossypium spp.; type=genetic_marker; length=167bp
GTGATAGGCAAAGGAGCATTTCTTGGTAGTCTATCTAAACGATGTTAGGG
AATTTTGTTATGGAAATGAACTACCACTACAATTTTATAAAAAAAAAAAA
AAATGGAACGAAACGATAGATAGATAAATAGATTGATAGAAGAATGTGAT
GCCTGAACCAAACTTCT