HAU0260, HAU0260 (genetic_marker) gossypium spp

Marker Overview
NameHAU0260
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(ATT)6
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0260_F: ATCTGCTTGGCGTTAAACTT
Primer 2HAU0260_R: TTCCAATCCAAACACTCCTT
Product Length181
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
D11chromosomeD11:1018809..1018988 +
A11chromosomeA11:1150373..1150553 +
CM018225.1chromosomeCM018225.1:987478..987657 +
CM018212.1chromosomeCM018212.1:1193844..1194024 +
D5_11chromosomeD5_11:64743665..64743844 -
KI_11chromosomeKI_11:926642..926824 +
KI_11chromosomeKI_11:933871..934049 +
Chr11_CRI-A2_v1.0.a1chromosomeChr11_CRI-A2_v1.0.a1:123356805..123356985 -
D10_11chromosomeD10_11:1238467..1238647 +
CM016624.1chromosomeCM016624.1:1287438..1287620 +
Dt_chr9chromosomeDt_chr9:41457191..41457370 -
Dt_chr9chromosomeDt_chr9:41469189..41469369 -
scaffold2724_A11supercontigscaffold2724_A11:25442..25622 +
D11chromosomeD11:1009065..1009244 +
Ghir_D11chromosomeGhir_D11:1062628..1062806 +
Ghir_A11chromosomeGhir_A11:1133216..1133397 +
D11chromosomeD11:1038827..1039006 +
A11chromosomeA11:1091608..1091788 +
D11chromosomeD11:1052810..1052989 +
A11chromosomeA11:1008609..1008789 +
D11chromosomeD11:1052819..1052998 +
A11chromosomeA11:1168597..1168777 +
At11chromosomeAt11:1270194..1270374 +
scaffold523supercontigscaffold523:98871..99051 +
scaffold19341supercontigscaffold19341:106981..107160 -
Gbar_D11chromosomeGbar_D11:1036202..1036381 +
Gbar_A11chromosomeGbar_A11:804576..804756 +
D11chromosomeD11:1055002..1055181 +
A11chromosomeA11:1200582..1200762 +
CM017633.1chromosomeCM017633.1:967864..968043 +
CM017620.1chromosomeCM017620.1:1206846..1207026 +
CM017659.1chromosomeCM017659.1:1060612..1060791 +
CM017646.1chromosomeCM017646.1:1230624..1230804 +
CM017711.1chromosomeCM017711.1:1014695..1014875 +
CM017698.1chromosomeCM017698.1:1172330..1172510 +
D11chromosomeD11:1035543..1035722 +
A11chromosomeA11:1155401..1155581 +
Chr11chromosomeChr11:1260805..1260985 +
Chr11chromosomeChr11:62229642..62229821 -
B_11chromosomeB_11:1192563..1192743 +
Chr07chromosomeChr07:977575..977755 +
chr07chromosomechr07:925622..925802 +
Chr_07chromosomeChr_07:864107..864287 +
Chr07chromosomeChr07:1058878..1059057 +
Chr07chromosomeChr07:796540..796719 +
Chr07chromosomeChr07:819929..820108 +
E11chromosomeE11:1088399..1088579 +
F11chromosomeF11:973702..973882 +
Chr11chromosomeChr11:185685180..185685360 -
Sequence
>HAU0260 ID=HAU0260; Name=HAU0260; organism=Gossypium spp.; type=genetic_marker; length=181bp
ATCTGCTTGGCGTTAAACTTGGCTTTCCCTCATTTCTCTCTCTAATAATA
AAATTATTATATTATTATTAATTGTTATTATATTTTTAACGTTTTCCTTA
GAAGAAAAAGAATATGAAAAAGCGAGAGAAAAAAAATATCCCCCCCAACC
CCAATAATAAAAAGGAGTGTTTGGATTGGAA