HAU0248, HAU0248 (genetic_marker) gossypium spp

Marker Overview
NameHAU0248
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GCA)5
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0248_F: TCAAGACAGAGTTGAAGATCTGA
Primer 2HAU0248_R: TCGATCTCATTGATCACCAG
Product Length280
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
E03chromosomeE03:50278047..50278411 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr03chromosomeChr03:151439388..151439752 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1CCRI 12-4 x (AD)5-7, F2 (2015)AD_ch02_At.02N/A91.8HAU0248View
Sequence
>HAU0248 ID=HAU0248; Name=HAU0248; organism=Gossypium spp.; type=genetic_marker; length=280bp
TCAAGACAGAGTTGAAGATCTGAAAAAGAAAAAAGCTTTGTAATTGTAAT
TGTAATTGTTTCCAGATCTCTGTGTATAGACAGTCTCAAATGGCAGCAGC
TGCAGCACCAGATCACTTGTTCCATTTGAGGAACAATTTCTACTTGGGTT
CCTTTCAGGCTGCCATCAACAACAGCGATCTTCCCAACCTCTCCCCCGAC
GACGCCGTTGAGCGCGACTGCCTCGTCTACCGCTCTTACATCGCTCTCGG
CAGCTACCAACTGGTGATCAATGAGATCGA