HAU0247, HAU0247 (genetic_marker) gossypium spp

Marker Overview
NameHAU0247
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TC)8
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0247_F: CGGCACTTTGATTACACTTTT
Primer 2HAU0247_R: ACTCTATGCGCCATTTTACC
Product Length201
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D05chromosomeD05:7837502..7837783 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
A05chromosomeA05:8646915..8647193 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:7252472..7252753 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018206.1chromosomeCM018206.1:8398658..8398940 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:6971726..6972006 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr05_CRI-A2_v1.0.a1chromosomeChr05_CRI-A2_v1.0.a1:8499973..8500251 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
Dt_chr9chromosomeDt_chr9:62342946..62343227 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr9chromosomeAt_chr9:53553096..53553374 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:7638459..7638740 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A05chromosomeA05:7931431..7931709 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Scaffold3280supercontigScaffold3280:22595..22873 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_D05chromosomeGhir_D05:19442..19723 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A05chromosomeGhir_A05:8618590..8618867 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:7438714..7438995 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A05chromosomeA05:8403087..8403365 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:7601302..7601583 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A05chromosomeA05:8621405..8621683 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D05chromosomeD05:7470560..7470841 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A05chromosomeA05:9003010..9003288 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At05chromosomeAt05:6545871..6546153 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7102supercontigscaffold7102:120475..120757 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12464supercontigscaffold12464:19221..19503 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold12464supercontigscaffold12464:28610..28891 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:7595156..7595437 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A05chromosomeGbar_A05:8098588..8098870 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:7688355..7688636 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A05chromosomeA05:8664087..8664369 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:7568409..7568690 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017614.1chromosomeCM017614.1:8532196..8532476 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:7838242..7838523 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017640.1chromosomeCM017640.1:8658616..8658894 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:7507752..7508033 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017692.1chromosomeCM017692.1:8413795..8414075 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:7646417..7646698 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A05chromosomeA05:8797368..8797646 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:9143111..9143390 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr05chromosomeChr05:8378509..8378787 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr05chromosomeChr05:7005664..7005945 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09_3392991chromosomeChr09_3392991:428..708 +Gossypium gossypioides (D6) genome ISU_v1n/a
Sequence
>HAU0247 ID=HAU0247; Name=HAU0247; organism=Gossypium spp.; type=genetic_marker; length=201bp
CGGCACTTTGATTACACTTTTTCCATTTTTTTCAGTCTCTCTCTCTCTCT
TTTTTTCCACCTAAAATTTTATTACAATAAATCCTCTAAAATTATCTGTT
TTTCACATTGATAATCTTCTCTTCTCGATATATCCGCTTCGGGTTTGAGA
GAGAAGAGATAAAGAACATAGAGAAAAAGAGGGTAAAATGGCGCATAGAG
T