HAU0246, HAU0246 (genetic_marker) gossypium spp

Marker Overview
NameHAU0246
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TTAT)4
PCR ConditionAnnealing temperature: 54.4
Primer 1HAU0246_F: TGTTTTCCGGTTTGTTCTTT
Primer 2HAU0246_R: TTTGAAGCATATCATAGTCG
Product Length215
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:120143293..120143507 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:115228899..115229113 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:125412682..125412896 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_08chromosomeD10_08:3114575..3114793 -Gossypium turneri (D10) genome NSF_v1_a2n/a
A08chromosomeA08:100220377..100220591 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:118652163..118652377 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:121281333..121281547 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:121494768..121494981 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:117222525..117222739 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At08chromosomeAt08:105084640..105084854 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7606supercontigscaffold7606:51199..51413 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:115885052..115885266 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:116883416..116883630 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017617.1chromosomeCM017617.1:115365145..115365359 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017695.1chromosomeCM017695.1:116140822..116141036 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:123413889..123414103 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:127889423..127889636 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:128832766..128832980 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:100476389..100476603 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr04chromosomeChr04:60647580..60647801 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr04chromosomechr04:45784177..45784395 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_04chromosomeChr_04:42880714..42880932 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr04chromosomeChr04:62963105..62963332 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr04chromosomeChr04:33896464..33896681 +Gossypium gossypioides (D6) genome ISU_v1n/a
F08chromosomeF08:101172735..101172953 +Gossypium longicalyx (F1) genome NSF_v1n/a
Sequence
>HAU0246 ID=HAU0246; Name=HAU0246; organism=Gossypium spp.; type=genetic_marker; length=215bp
TGTTTTCCGGTTTGTTCTTTTTTTGATATAAGTAAGATTGGAATTCATAA
ATGCTGAGATTCGAATCTAAATTTATAAAATGTTGTCTTTTAAAAGTAAT
TGTATGAATGACTTAAATTAAATTTGGATTCGACTCAGTTATTAAAAATT
AAATTTTCTTATTTATTCTATTTAGTGTCACATTAGAATTTGTTACGACT
ATGATATGCTTCAAA