HAU0245, HAU0245 (genetic_marker) gossypium spp

Marker Overview
NameHAU0245
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(TA)8
PCR ConditionAnnealing temperature: 56.9
Primer 1HAU0245_F: ATAAGAGAGCTGGGCGAATA
Primer 2HAU0245_R: AAAGCCCACTTAACAGCAAC
Product Length128
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D10chromosomeD10:424343..424469 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018224.1chromosomeCM018224.1:427258..427384 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_10chromosomeD5_10:62009604..62009730 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_10chromosomeKI_10:46861113..46861239 +Gossypioides kirkii genome ISU_v3n/a
Chr10_CRI-A2_v1.0.a1chromosomeChr10_CRI-A2_v1.0.a1:129043150..129043276 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_10chromosomeD10_10:63491403..63491529 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016623.1chromosomeCM016623.1:672672..672798 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold413.1supercontigscaffold413.1:733295..733421 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D10chromosomeD10:370505..370631 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D10chromosomeGhir_D10:666657..666783 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D10chromosomeD10:428514..428640 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D10chromosomeD10:453764..453890 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D10chromosomeD10:453967..454093 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold1187supercontigscaffold1187:68791..68917 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D10chromosomeGbar_D10:415557..415683 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D10chromosomeD10:457138..457264 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017632.1chromosomeCM017632.1:430275..430401 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017658.1chromosomeCM017658.1:416435..416561 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017710.1chromosomeCM017710.1:438458..438584 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D10chromosomeD10:402375..402501 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr10chromosomeChr10:490989..491115 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr10chromosomeChr10:467766..467892 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr10chromosomeChr10:383307..383433 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_10chromosomeB_10:95760851..95760977 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr11chromosomeChr11:416543..416669 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr11chromosomechr11:361201..361640 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_11chromosomeChr_11:336652..336778 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr11chromosomeChr11:401614..401740 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr11chromosomeChr11:348919..349045 -Gossypium aridum (D4) genome ISU_v1n/a
Chr11chromosomeChr11:351601..351727 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr11chromosomeChr11:407113..407398 -Gossypium lobatum (D7) genome ISU_v1n/a
E10chromosomeE10:113490976..113491102 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr10chromosomeChr10:169216484..169216610 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x 7235, RIL (2015)AD_ch24_Dt.08N/A26HAU0245View
Sequence
>HAU0245 ID=HAU0245; Name=HAU0245; organism=Gossypium spp.; type=genetic_marker; length=128bp
ATAAGAGAGCTGGGCGAATAGGTTGTGGTAAAATCATGGTCTATGTCGGG
GGGAAGAAAAGGGCCCATCAATTTCATGATATTATATATAGNTATATACG
TTTGATTTGTTGCTGTTAAGTGGGCTTT