HAU0236, HAU0236 (genetic_marker) gossypium spp

Marker Overview
NameHAU0236
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(GAA)6
PCR ConditionAnnealing temperature: 56.5
Primer 1HAU0236_F: AAGGATACTGTTGCGGAGAG
Primer 2HAU0236_R: CTAACCAGGAGGAGCAATTT
Product Length216
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D02chromosomeD02:46293784..46293996 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018216.1chromosomeCM018216.1:43479159..43479371 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
CM018204.1chromosomeCM018204.1:65861608..65861823 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:23388431..23388643 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
KI_03chromosomeKI_03:31666843..31667051 -Gossypioides kirkii genome ISU_v3n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:94972177..94972392 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
D10_03chromosomeD10_03:23309120..23309332 +Gossypium turneri (D10) genome NSF_v1_a2n/a
CM016616.1chromosomeCM016616.1:51411973..51412185 +Gossypium australe (G2) genome CRI_v1.1n/a
At_chr8chromosomeAt_chr8:74774182..74774394 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
At_chr12chromosomeAt_chr12:97964476..97964691 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D02chromosomeD02:43874197..43874409 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
A03chromosomeA03:60556325..60556540 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:45759790..45760002 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:70563416..70563631 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D02chromosomeD02:46406505..46406717 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:70110334..70110549 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D02chromosomeD02:47165583..47165795 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:67706202..67706417 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D02chromosomeD02:44516985..44517197 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
A03chromosomeA03:63988368..63988583 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold6865supercontigscaffold6865:141605..141820 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold15235supercontigscaffold15235:110360..110572 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:44123265..44123477 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:65687421..65687636 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D02chromosomeD02:45384661..45384873 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
A03chromosomeA03:67153260..67153475 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017624.1chromosomeCM017624.1:46251340..46251552 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017612.1chromosomeCM017612.1:67045573..67045788 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017650.1chromosomeCM017650.1:47443704..47443916 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017638.1chromosomeCM017638.1:70953141..70953356 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017702.1chromosomeCM017702.1:44917916..44918128 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
CM017690.1chromosomeCM017690.1:66698845..66699060 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D02chromosomeD02:47912650..47912862 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
A03chromosomeA03:70916324..70916539 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:40764244..40764459 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:39670013..39670228 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:40406933..40407145 -Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:33409449..33409664 +Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:42619367..42619570 -Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:31317959..31318171 -Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_05chromosomeChr_05:27590880..27591092 -Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr05chromosomeChr05:44061409..44061621 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr05chromosomeChr05:28307675..28307887 -Gossypium aridum (D4) genome ISU_v1n/a
Chr05chromosomeChr05:23622512..23622727 -Gossypium gossypioides (D6) genome ISU_v1n/a
Chr05chromosomeChr05:29559526..29559738 -Gossypium lobatum (D7) genome ISU_v1n/a
E03chromosomeE03:86013407..86013619 -Gossypium stocksii (E1) genome NSF_v1n/a
F03chromosomeF03:76428267..76428472 -Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:75510084..75510299 +Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0236 ID=HAU0236; Name=HAU0236; organism=Gossypium spp.; type=genetic_marker; length=216bp
AAGGATACTGTTGCGGAGAGATGGGCATTGAAGGGCTTGGAAGTGGAGGT
TCCATGATGTACCAGAAATTTAGCAGCACTGGTGGCTGTGGATCACCAAG
ATCAACTCTGAAATGCTGCTGGAAAGAGGAAGAAGAGGAAGAAGAGTAGT
TGAAAATATCTTTTATGGTTTTATGTTTTTGTTTTCTATTATAAATAAAT
TGCTCCTCCTGGTTAG