HAU0235, HAU0235 (genetic_marker) gossypium spp

Marker Overview
NameHAU0235
Genbank IDN/A
TypeSSR
SpeciesGossypium spp.
Source TypeEST
Repeat Motif(AG)8
PCR ConditionAnnealing temperature: 57.0
Primer 1HAU0235_F: TTATTTCGGCCAAAAACTTC
Primer 2HAU0235_R: CGGTTGGAAAGCCTAAAATA
Product Length233
Publication[view all]
CommentPrimer data obtained in 2012
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A08chromosomeA08:7453625..7453857 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018209.1chromosomeCM018209.1:7285758..7285990 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr08_CRI-A2_v1.0.a1chromosomeChr08_CRI-A2_v1.0.a1:8237052..8237284 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr4chromosomeAt_chr4:86018799..86019032 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A08chromosomeA08:7020332..7020564 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A08chromosomeGhir_A08:7471991..7472223 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A08chromosomeA08:7346087..7346319 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A08chromosomeA08:7830376..7830608 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A08chromosomeA08:7385176..7385408 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At08chromosomeAt08:7339701..7339933 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold7722supercontigscaffold7722:82911..83143 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A08chromosomeGbar_A08:7668189..7668421 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A08chromosomeA08:7398920..7399152 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017643.1chromosomeCM017643.1:7952135..7952367 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017695.1chromosomeCM017695.1:7477093..7477325 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A08chromosomeA08:7910483..7910715 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr08chromosomeChr08:8409748..8409980 +Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr08chromosomeChr08:8702980..8703212 +Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
B_08chromosomeB_08:8833470..8833703 +Gossypium anomalum (B1) genome NSF_v1n/a
E08chromosomeE08:10433500..10433730 +Gossypium stocksii (E1) genome NSF_v1n/a
Chr08chromosomeChr08:187080669..187080902 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Sequence
>HAU0235 ID=HAU0235; Name=HAU0235; organism=Gossypium spp.; type=genetic_marker; length=233bp
TTATTTCGGCCAAAAACTTCATTAAATAATTCTAATTTAGTCAGAGAGAT
GAGAGAGGGTGTTTTAAACCCTAACTATTTATATTCTCATATGGAAATTT
TGATTAAGAAATACTGGTGGCTAATGCCTCCAGCCCCTGTCGGATTTTTA
TTGGTTTTGATTTTTGGAAGTTCTAGTTCTGTTTTAGTGTGGGATGTCAT
CCTCATTAGTGATTATTTTAGGCTTTCCAACCG