HAU0016, HAU0016 (genetic_marker) Gossypium barbadense

Marker Overview
NameHAU0016
AliasHAU016
Genbank IDEE593122
TypeSSR
SpeciesGossypium barbadense
Germplasm3-79
Source TypeEST
Repeat Motif(GAA)4
Primer 1HAU0016_F: TTCATTGGCTGTGTACTTGG
Primer 2HAU0016_R: ACAGCGATTTCCTTTACTGC
Product Length222
Publication[view all]
ContactZhang, Xian-Long
CommentPrimer data obtained in 2007-05
Contact
NameDetails
Zhang, Xian-Long
Description:Genomics breeding
First name:Xian-Long
Last name:Zhang
Title:Professor
Institution:College of Plant Science and Technology, Huazhong Agricultural University
Address:#1 Shizishan, Wuhan, Hubei 430070
Country:China
Email:xlzhang@mail.hzau.edu.cn
Phone:+86 27 87280510
Fax:+86 27 87280016
Last update:12-Jun-2009
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankEE593122
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
D09chromosomeD09:35634268..35634664 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018223.1chromosomeCM018223.1:33761409..33761806 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
KI_09chromosomeKI_09:26206348..26206729 -Gossypioides kirkii genome ISU_v3n/a
CM016622.1chromosomeCM016622.1:26622178..26622578 +Gossypium australe (G2) genome CRI_v1.1n/a
Dt_chr6chromosomeDt_chr6:15845373..15845769 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D09chromosomeD09:33921841..33922237 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D09chromosomeGhir_D09:35799424..35799820 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D09chromosomeD09:35631212..35631608 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D09chromosomeD09:35545251..35545647 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
D09chromosomeD09:33609706..33610102 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
Dt09chromosomeDt09:36285572..36285969 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold25472supercontigscaffold25472:161567..161964 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D09chromosomeGbar_D09:34369380..34369777 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D09chromosomeD09:37002108..37002504 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017631.1chromosomeCM017631.1:34570449..34570845 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017657.1chromosomeCM017657.1:35927927..35928323 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017709.1chromosomeCM017709.1:35198169..35198565 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
D09chromosomeD09:37122791..37123187 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr06chromosomeChr06:35579677..35580058 -Gossypium davidsonii (D3d-8) genome CRI_v1n/a
E09chromosomeE09:23257853..23258253 +Gossypium stocksii (E1) genome NSF_v1n/a
Germplasm
Stock NameType
3-79accession
Sequence
>HAU0016 ID=HAU0016; Name=HAU0016; organism=Gossypium barbadense; type=genetic_marker; length=222bp
TTCATTGGCTGTGTACTTGGTAGCTCAATATGCTCGCTATGAAATGAGGA
AAATGGAAGCGGAGCTAGAGGAGAAAGAGAAGCACGAAGAAGAAGAAATG
AAAAGGAAGCAAGAAGAAGAGGAGAAAGATAAAGAGGTGGAACAAATTGC
ACCTGATTCAGAGCTTTTCGAGGTAAAAAGGAGACTAGGTAAGCTAGAGG
AGGCAGTAAAGGAAATCGCTGT