Gh686, Gh686 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh686
Genbank IDDQ908615
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908615
Source Typegenomic
Repeat MotifGT(8)
Primer 1Gh686_F: CTAGGGTAGAATATGGAGACAATGC
Primer 2Gh686_R: CTGATTGAGGATAATTCCTTTCTCC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908615
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
scaffold_705supercontigscaffold_705:46858..46949 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
D05chromosomeD05:53569306..53569397 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018219.1chromosomeCM018219.1:52347788..52347879 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_05chromosomeD5_05:47156421..47156512 +Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
D10_05chromosomeD10_05:11400135..11400228 -Gossypium turneri (D10) genome NSF_v1_a2n/a
Dt_chr9chromosomeDt_chr9:29274505..29274594 +Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
D05chromosomeD05:51497826..51497917 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D05chromosomeGhir_D05:52571765..52571855 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
D05chromosomeD05:53589847..53589938 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
D05chromosomeD05:52966321..52966412 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold995supercontigscaffold995:421691..421782 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D05chromosomeGbar_D05:52402167..52402258 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
D05chromosomeD05:54278261..54278352 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017627.1chromosomeCM017627.1:52998966..52999053 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017653.1chromosomeCM017653.1:54596133..54596220 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017705.1chromosomeCM017705.1:53416161..53416250 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
D05chromosomeD05:55250204..55250295 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr05chromosomeChr05:48332052..48332143 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
Chr09chromosomeChr09:48893765..48893876 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr09chromosomechr09:39141808..39141899 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr_09chromosomeChr_09:38245248..38245789 +Gossypium harknessii (D2-2) genome ISU_v1n/a
Chr09chromosomeChr09:51699706..51699807 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
Chr09chromosomeGh686:1..631 .
Chr09:48222625..48223257 +		n/a
scaffold180supercontigGh686:1..631 .
scaffold180:174771..175403 +		n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908615DQ908615Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1(YM1 x CCRI35) x (YM1 x 7235), 4WC (2012)AD_ch19_Dt.05N/A37.2Gh686View
2Yumian-1 x 7235, RIL (2015)AD_ch11_At.11N/A72.2Gh686View
3CCRI-35 x Yumian-1, RIL (2015)AD_ch19_Dt.05N/A141.1Gh686View
4CCRI-35 x Yumian-1, RIL (2017)AD_ch19_Dt.05N/A154.43Gh686View
Sequence
>Gh686 ID=Gh686; Name=Gh686; organism=Gossypium hirsutum; type=genetic_marker; length=90bp
CTAGGGTAGAATATGGAGACAATGCTAAATTAGGATATATATGTGTGTGT
GTGTGTGTGCTTGAGGGAGAAAGGAATTATCCTCAATCAG