Gh612, Gh612 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh612
Genbank IDDQ908546
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908546
Source Typegenomic
Repeat MotifGT(10)
Primer 1Gh612_F: AGAACATACTAATTAGCCATTCTCACC
Primer 2Gh612_R: ATCTTTCTTTTCACCTGGGGCTATC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908546
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A03chromosomeA03:107231202..107231301 +Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018204.1chromosomeCM018204.1:104575940..104576041 +Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
D5_03chromosomeD5_03:1363940..1364035 -Gossypium raimondii (D5) 'D5-4' genome NSF_v1n/a
Chr03_CRI-A2_v1.0.a1chromosomeChr03_CRI-A2_v1.0.a1:134160408..134160513 +Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
CM016616.1chromosomeCM016616.1:2120760..2120874 -Gossypium australe (G2) genome CRI_v1.1n/a
scaffold190.1supercontigscaffold190.1:719158..719257 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A03chromosomeA03:98754329..98754428 +Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_D02chromosomeGhir_D02:68404068..68404161 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:111524741..111524838 +Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A03chromosomeA03:110139241..110139340 +Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A03chromosomeA03:108630364..108630463 +Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A03chromosomeA03:103900998..103901097 +Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
At03chromosomeAt03:100588319..100588420 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
At03chromosomeAt03:100596984..100597077 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold50168supercontigscaffold50168:11743..11844 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold50168supercontigscaffold50168:20408..20501 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
scaffold28684supercontigscaffold28684:26019..26112 -Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_D02chromosomeGbar_D02:66264701..66264794 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
Gbar_A03chromosomeGbar_A03:103786571..103786672 +Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A03chromosomeA03:106130277..106130374 +Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017612.1chromosomeCM017612.1:105451778..105451879 +Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017638.1chromosomeCM017638.1:112596958..112597067 +Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017690.1chromosomeCM017690.1:106588110..106588207 +Gossypium darwinii (AD5) genome HGS_v1.1n/a
A03chromosomeA03:112219051..112219150 +Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr03chromosomeChr03:1387424..1387523 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr03chromosomeChr03:1546229..1546334 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Chr03chromosomeChr03:61712988..61713083 +Gossypium raimondii (D5) 'Grai D502' genome HAU_v1n/a
B_03chromosomeB_03:1577782..1577886 -Gossypium anomalum (B1) genome NSF_v1n/a
Chr05chromosomeChr05:64744189..64744284 +Gossypium thurberi (D1-5) genome CRI_v1n/a
chr05chromosomechr05:49327818..49327913 +Gossypium armourianum (D2-1) genome ISU_v1n/a
Chr05chromosomeChr05:66219309..66219401 +Gossypium davidsonii (D3d-8) genome CRI_v1n/a
F03chromosomeF03:108872535..108872657 +Gossypium longicalyx (F1) genome NSF_v1n/a
Chr03chromosomeChr03:1581399..1581516 -Gossypium rotundifolium (K2) 'Grot K201' genome HAU_v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908546DQ908546Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1Yumian-1 x T586, RIL (2015)AD_ch03_At.03N/A6.9Gh612View
Sequence
>Gh612 ID=Gh612; Name=Gh612; organism=Gossypium hirsutum; type=genetic_marker; length=98bp
AGAACATACTAATTAGCCATTCTCACCCAAAAAAAAAGTGTCCGCGTGTA
TGTGTGTGTGTGTGTGTGTGTAGGATAGCCCCAGGTGAAAAGAAAGAT