Gh474, Gh474 (genetic_marker) Gossypium hirsutum

Marker Overview
NameGh474
Genbank IDDQ908413
TypeSSR
SpeciesGossypium hirsutum
GermplasmTamcot Sphinx
Source SequenceDQ908413
Source Typegenomic
Repeat MotifCA(11)
Primer 1Gh474_F: ACGTATCACATACTCATTGCATAGC
Primer 2Gh474_R: TGTGGCTTGGTGAATTGTAGAACC
Publication[view all]
CommentPrimer data obtained in 2008-01 from Hoffman, Steve M.
Cross References
External references for this genetic_marker
DatabaseAccession
DB:genbankDQ908413
Alignments
The following features are aligned
Feature Name Type LocationAnalysisReference
A07chromosomeA07:17362932..17363070 -Gossypium hirsutum (AD1) 'TM-1' genome UTX-JGI-Interim-release_v1.1n/a
CM018208.1chromosomeCM018208.1:17221591..17221731 -Gossypium barbadense (AD2) '3-79' genome HGS_v1.1n/a
Chr07_CRI-A2_v1.0.a1chromosomeChr07_CRI-A2_v1.0.a1:15913906..15914040 -Gossypium arboreum (A2) 'SXY1' genome CRI-updated_v1n/a
At_chr9chromosomeAt_chr9:77385512..77385650 -Gossypium hirsutum (AD1) 'TM-1' genome CGP-BGI_v1n/a
A07chromosomeA07:16548277..16548415 -Gossypium hirsutum (AD1) 'TM-1' genome NAU-NBI_v1.1n/a
Ghir_A07chromosomeGhir_A07:17633436..17633574 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
Ghir_A03chromosomeGhir_A03:51361743..51361880 -Gossypium hirsutum (AD1) 'TM-1' genome HAU_v1 / v1.1n/a
A07chromosomeA07:16889816..16889954 -Gossypium hirsutum (AD1) 'TM-1' genome ZJU-improved_v2.1_a1n/a
A07chromosomeA07:17659853..17659991 -Gossypium hirsutum (AD1) 'TM-1' genome CRI_v1n/a
A07chromosomeA07:17635024..17635162 -Gossypium hirsutum (AD1) 'ZM24' genome CRI_v1n/a
scaffold15987supercontigscaffold15987:41819..41959 +Gossypium barbadense (AD2) '3-79' genome HAU_v1n/a
Gbar_A07chromosomeGbar_A07:17203976..17204116 -Gossypium barbadense (AD2) '3-79' genome HAU_v2_a1n/a
A07chromosomeA07:17216485..17216625 -Gossypium barbadense (AD2) 'H7124' genome ZJU_v1.1_a1n/a
CM017616.1chromosomeCM017616.1:17153821..17153967 -Gossypium tomentosum (AD3) genome HGS_v1.1n/a
CM017642.1chromosomeCM017642.1:17158236..17158380 -Gossypium mustelinum (AD4) genome JGI_v1.1n/a
CM017694.1chromosomeCM017694.1:17490663..17490801 -Gossypium darwinii (AD5) genome HGS_v1.1n/a
A07chromosomeA07:17804814..17804952 -Gossypium hirsutum (AD1) 'TM-1' genome UTX_v2.1n/a
Chr07chromosomeChr07:18369457..18369611 -Gossypium herbaceum (A1) 'Mutema' genome WHU_v1n/a
Chr07chromosomeChr07:18616929..18617063 -Gossypium arboreum (A2) 'SXY1' genome WHU-updated v1n/a
Germplasm
Stock NameType
Tamcot Sphinxaccession
Relationships

The following sequence_feature feature(s) derives from this genetic_marker:

Feature NameUnique NameSpeciesType
DQ908413DQ908413Gossypium hirsutumsequence_feature


Map Positions
#Map NameLinkage GroupBinPositionLocusMapViewer
1GX1135 x GX100-2, RIL (2016)AD_ch07_At.07N/A87.8Gh474View
Sequence
>Gh474 ID=Gh474; Name=Gh474; organism=Gossypium hirsutum; type=genetic_marker; length=139bp
ACGTATCACATACTCATTGCATAGCATTTTCATGAAACTTTCATTTTTAT
TTATCATTATTTCATACTTTTTCAATATGTTACAAACATATCACACACAC
ACACACACACACAATGGTTCTACAATTCACCAAGCCACA